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Other CD2 Family entries

IMGT RPI entry from gene to protein for Mus musculus CD244

Citing IMGT RPI entry for CD244

Duprat, E. et al. IMGT standardization for alleles and mutations of the V-LIKE-DOMAINs and C-LIKE-DOMAINs of the immunoglobulin superfamily, Recent Research Developments in Human Genetics, 2, 111-136 (2004) pdf with permission from Research Signpost

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

CD244 Gene exon/intron organization

Legend:

Number of alleles: 10

IMGT reference alleles

Allele names Gene functionality Strains IMGT reference sequences
Exons Accession numbers Molecule type
CD244*01 F C57BL/6 EX1-9 L19057 [1] cDNA
CD244*02 F C57BL/6J EX1-9 AK137505 cDNA
CD244*03 F BALB/c EX1-9 AF184208 [2] cDNA
CD244*04 F A.CA EX1-9 AF234831 cDNA
CD244*05 F 129/SvJ EX1-9 AF234830 cDNA
CD244*06 F NOD EX1-9 AK171232 cDNA
CD244*07 F MRL/MpJ EX1-9 AB196800 cDNA
CD244*08 F NOD EX1-5, EX10 AK170167 cDNA Splicing B (1)
CD244*09 F C57BL/6 EX1-5, EX10 AF082803[3] cDNA Splicing B
CD244*10 F C57BL/6J EX1-5, EX11 AK171544 cDNA Splicing C (2)

IMGT reference sequences (in FASTA format) for the allele(s): CD244*01 to CD244*10

Other sequences from the literature

Allele names Gene functionality Strains IMGT reference sequences
Exons Accession numbers Molecule type
CD244*01 F EX1-9 NM_018729 cDNA
CD244*07 F NZB/BINJ EX1-9 AB196801 cDNA
NZW/LacJ EX1-9 AB196802
BXSB/MpJ EX1-9 AB196803

Corresponding protein database accession numbers

Allele names Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
CD244*01 L19057 Q07763 398 aa 1
NM_018729 NP_061199 398 aa 1
CD244*02 AK137505 Tr:Q3UV86 397 aa 1
CD244*03 AF184208 Tr: Q9ESE5 399 aa 1
CD244*04 AF234831 Tr:Q07763 397 aa 1
CD244*05 AF234830 Tr: Q9JIE1 398 aa 1
CD244*06 AK171232 Tr:Q3TBI0 398 aa 1
CD244*07 AK170167 Tr:Q3TDI8 341 aa 2
CD244*08 AF082803 341 aa 2
CD244*09 AK171544 Tr:Q3TAZ 312 aa 3
IMGT notes:
  1. (1) Multiple sequence variations in each allele, hence can not be explained.
  2. (2) Splicing B (341 aa). No EX6-9. Utilize a novel exon (EX10) of 33 codons.
  3. (3) Splicing C (312 aa). No EX6-9. Utilize a novel exon (EX11) of 4 codons.
IMGT references:
  1. [1] Mathew P.A. et al, J. Immunol. 151 (10), 5328-5337 (1993) . PMID: 8228228
  2. [2] Kumaresan P.R., Immunogenetics 51 (8-9), 758-761 (2000) . PMID: 10941850
  3. [3] Stepp S.E. et al, Eur. J. Immunol. 29 (8), 2392-2399 (1999) . PMID: 10458751

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

CD244*01: L19057(c)

Nucleotide sequence

1        atgttggggc aagctgtcct gttcacaacc ttcctgctcc tcagggctca tcagggccaa

61       gactgcccag attcttctga agaagtggtt ggtgtctcag gaaagcctgt ccagctgagg

121      ccttccaaca tacagacaaa agatgtttct gttcaatgga agaagacaga acagggctca

181      cacagaaaaa ttgagatcct gaattggtat aatgatggtc ccagttggtc aaatgtatct

241      tttagtgata tctatggttt tgattatggg gattttgctc ttagtatcaa gtcagctaag

301      ctgcaagaca gtggtcacta cctgctggag atcaccaaca caggcggaaa agtgtgcaat

361      aagaacttcc agcttcttat acttgatcat gttgagaccc ctaacctgaa ggcccagtgg

421      aagccctgga ctaatgggac ttgtcaactg tttttgtcct gcttggtgac caaggatgac

481      aatgtgagct acgccttttg gtacagaggg agcactctga tctccaatca aaggaatagt

541      acccactggg agaaccagat tgacgccagc agcctgcaca catacacctg caacgttagc

601      aacagagcca gctgggcaaa ccacaccctg aacttcaccc atggctgtca aagtgtccct

661      tcgaatttca gatttctgcc ctttggggtg atcatcgtga ttctagttac attatttctc

721      ggggccatca tttgtttctg tgtgtggact aagaagagga agcagttaca gttcagccct

781      aaggaacctt tgacaatata tgaatatgtc aaggactcac gagccagcag ggatcaacaa

841      ggatgctcta gggcctctgg atctccctcg gctgtccagg aagatgggag gggacaaaga

901      gaattggaca ggcgtgtttc tgaggtgctg gagcagttgc cacagcagac tttccctgga

961      gatagaggca ccatgtactc tatgatacag tgcaagcctt ctgattccac atcacaagaa

1021     aaatgtacag tatattcagt agtccagcct tccaggaagt ctggatccaa gaagaggaac

1081     cagaactatt ccttaagttg taccgtgtac gaggaggttg gaaacccatg gctcaaagct

1141     cacaaccctg ccaggctgag ccgcagagag ctggagaact ttgatgtcta ctcctag
Nucleotide sequence in FASTA format (without gaps) CD244*01

Amino acid sequence

1        MLGQAVLFTT FLLLRAHQGQ DCPDSSEEVV GVSGKPVQLR PSNIQTKDVS VQWKKTEQGS

61       HRKIEILNWY NDGPSWSNVS FSDIYGFDYG DFALSIKSAK LQDSGHYLLE ITNTGGKVCN

121      KNFQLLILDH VETPNLKAQW KPWTNGTCQL FLSCLVTKDD NVSYAFWYRG STLISNQRNS

181      THWENQIDAS SLHTYTCNVS NRASWANHTL NFTHGCQSVP SNFRFLPFGV IIVILVTLFL

241      GAIICFCVWT KKRKQLQFSP KEPLTIYEYV KDSRASRDQQ GCSRASGSPS AVQEDGRGQR

301      ELDRRVSEVL EQLPQQTFPG DRGTMYSMIQ CKPSDSTSQE KCTVYSVVQP SRKSGSKKRN

361      QNYSLSCTVY EEVGNPWLKA HNPARLSRRE LENFDVYS*
Amino acid sequence in FASTA format (without gap) CD244*01

Legend: