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Other CD2 Family entries

IMGT RPI entry from gene to protein for Mus musculus CD48

Citing IMGT RPI entry for CD48

Duprat, E. et al. IMGT standardization for alleles and mutations of the V-LIKE-DOMAINs and C-LIKE-DOMAINs of the immunoglobulin superfamily, Recent Research Developments in Human Genetics, 2, 111-136 (2004) pdf with permission from Research Signpost

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

CD48 Gene exon/intron organization

Legend:

Number of alleles: 5

IMGT reference alleles

Allele names Gene functionality IMGT reference sequences
Exons Strain Accession numbers Molecule type
CD48*01 F EX1-4 C57BL/6J AK007741 cDNA
CD48*02 F EX1-4 BC060977 cDNA (1)
CD48*03 F EX1-4 NZB/B1NJ AB196821 cDNA (2)
CD48*04 F EX1-4 BALB/c AK146173 cDNA (3)
CD48*05 F EX1-2, 4 NOD AK088027 cDNA (4) splicing B

IMGT reference sequences (in FASTA format) for the allele(s): CD48*01 to CD48*05

Other sequences from the literature

Allele names Gene functionality IMGT reference sequences
Exons Strain Accession numbers Molecule type
CD48*01 F EX1-4 C57BL/6J AK084984 cDNA
C57BL/6J AK151601
BALB/c X17501
BALB/c X53526
MRL/MpJ AB196820
NM_007649
CD48*03 F EX1-4 NZW/LacJ AB196822 cDNA
BXSB/MpJ AB196823

Corresponding protein database accession numbers

CD48*01 Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
CD48*01 AK007741 P18181, Q545K2 240 aa 1
NM_007649 NP_031675 240 aa 1
CD48*02 BC060977 Q6P905 240 aa 1
CD48*03 AB196821 240 aa 1
CD48*04 AK146173 240 aa 1
CD48*05 AK088027 Tr:Q8C2T1 151 aa 2
IMGT notes:
  1. (1) In EX1 14a>g; 5K>R.
  2. (2) In EX2[D1] 253a>g; 85G>D, according to IMGT unique numbering for V-DOMAIN and V-LIKE-DOMAIN.
  3. (3) In EX1 14a>g; 5K>R, In EX2[D1] 80c>a; 27P>Q and 253a>g; 85G>D, according to IMGT unique numbering for V-DOMAIN and V-LIKE-DOMAIN .
  4. (4) Splicing B. In EX1 14a>g; 5K>R and in EX2[D1] 253a>g; 85G>D, according to IMGT unique numbering for V-DOMAIN and V-LIKE-DOMAIN. No EX3.

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

CD48*01: AK007741(c)

Nucleotide sequence

1        atgtgcttca taaaacaggg atggtgtctg gtcctggaac tgctactgct gcccttggga

61       actggatttc aaggtcattc aataccagat ataaatgcca ccaccggcag caatgtaacc

121      ctgaaaatcc ataaggaccc acttggacca tataaacgta tcacctggct tcatactaaa

181      aatcagaaga ttttagagta caactataat agtacaaaga caatcttcga gtctgaattt

241      aaaggcaggg tttatcttga agaaaacaat ggtgcacttc atatctctaa tgtccggaaa

301      gaggacaaag gtacctacta catgagagtg ctgcgtgaaa ctgagaacga gttgaagata

361      accctggaag tatttgatcc tgtgcccaag ccttccatag aaatcaataa gactgaagcg

421      tcgactgatt cctgtcacct gaggctatcg tgtgaggtaa aggaccagca tgttgactat

481      acttggtatg agagctcggg acctttcccc aaaaagagtc caggatatgt gctcgatctc

541      atcgtcacac cacagaacaa gtctacattt tacacctgcc aagtcagcaa tcctgtaagc

601      agcaagaacg acacagtgta cttcactcta ccttgtgatc tagccagatc ttctggagta

661      tgttggactg caacttggct agtggtcaca acactcatca ttcacaggat cctgttaacc

721      tga
Nucleotide sequence in FASTA format (without gaps) CD48*01

Amino acid sequence

1        MCFIKQGWCL VLELLLLPLG TGFQGHSIPD INATTGSNVT LKIHKDPLGP YKRITWLHTK

61       NQKILEYNYN STKTIFESEF KGRVYLEENN GALHISNVRK EDKGTYYMRV LRETENELKI

121      TLEVFDPVPK PSIEINKTEA STDSCHLRLS CEVKDQHVDY TWYESSGPFP KKSPGYVLDL

181      IVTPQNKSTF YTCQVSNPVS SKNDTVYFTL PCDLARSSGV CWTATWLVVT TLIIHRILLT

241      *
Amino acid sequence in FASTA format (without gap) CD48*01

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