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Other CD2 Family entries

IMGT RPI entry from gene to protein for Mus musculus CD84

Citing IMGT RPI entry for CD84

Duprat, E. et al. IMGT standardization for alleles and mutations of the V-LIKE-DOMAINs and C-LIKE-DOMAINs of the immunoglobulin superfamily, Recent Research Developments in Human Genetics, 2, 111-136 (2004) pdf with permission from Research Signpost

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

CD84 Gene exon/intron organization

Legend:

Number of alleles: 4

IMGT reference alleles

Allele names Gene functionality IMGT reference sequences
Exons Strain Accession numbers Molecule type
CD84*01 F EX1-7 AF043445 [1] cDNA
CD84*02 F EX1-7 NZW/LacJ AB196814 cDNA (1)
CD84*03 F EX1-7 NZB/B1NJ AB196813 cDNA (2)
CD84*04 F EX1-7 NOD AK171067 cDNA (3)

IMGT reference sequences (in FASTA format) for the allele(s): CD84*01 to CD84*04

Other sequences from the literature

Allele names Gene functionality IMGT reference sequences
Exons Strain Accession numbers Molecule type
CD84*01 F EX1-7 NOD AK154834 cDNA
EX1-2 C57BL/6J AK037385 cDNA splicing B (4)
C57BL/6J AK154834 cDNA splicing B
EX1-7 NM_013489 cDNA
CD84*02 F EX1-2 NOD AK156464 cDNA splicing B
NOD AK157075
CD84*04 F EX1-7 MRL/MpJ AB196812 cDNA
BXSB/MpJ AB196815

Corresponding protein database accession numbers

Allele names Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
CD84*01 AF043445 Q18PI6 329 aa 1
NM_013489 NP_038517 329 aa 1
CD84*02 AB196814 329 aa 1
CD84*03 AB196813 329 aa 1
CD84*04 AK171067 329 aa 1
IMGT notes:
  1. (1) In EX2[D1] 37g>a; 13V>M, numbering according to IMGT unique numbering for V-DOMAIN and V-LIKE-DOMAIN. In EX4 105t>c encoding CYTOPLASMIC-REGION.
  2. (2) In EX2[D1] 37g>a; 13V>M, numbering according to IMGT unique numbering for V-DOMAIN and V-LIKE-DOMAIN. In EX4 105t>c and EX5 17a>g;6K>E encoding CYTOPLASMIC-REGION
  3. (3) In EX2[D1] 37g>a; 13V>M, numbering according to IMGT unique numbering for V-DOMAIN and V-LIKE-DOMAIN. In EX4 105t>c, EX5 17a>g;6K>E and 25g>a encoding CYTOPLASMIC-REGION.
  4. (4) Splicing B. No EX3-EX7. EX2[D1] has 44nt extension at 3' end.
IMGT references:
  1. [1] de la Funte MA. et al, Immunogenetics 49, 249-255 (1999) . PMID: 10079287

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

CD84*01: AF043445(c)

Nucleotide sequence

1        atggcccagc gccatctgtg gatctggttc ctttgcctac aaacctggtc tgaagcagca

61       ggaaaagatg cagacccggt ggtaatgaat gggattcttg gggagtcagt tactttcctc

121      ttaaatattc aagaaccaaa gaaaattgac aacattgcct ggacttctca atcatctgtt

181      gcttttataa aaccaggagt caataaagct gaagttacca taacccaggg cacttataaa

241      ggacgaatag aaatcataga tcagaagtat gacctggtca ttagagacct gaggatggaa

301      gatgcaggaa cttacaaagc agacatcaat gaagagaatg aggaaaccat caccaagatc

361      tactaccttc atatctaccg tcgacttaaa acaccaaaaa ttacacagag tttgatatca

421      tctttgaaca atacctgtaa tatcacactg acatgctctg tggaaaagga agaaaaggat

481      gtcacatata gctggagtcc ctttggagag aaaagcaatg tccttcaaat cgtccactcc

541      cccatggacc aaaaactgac ctacacatgt acagcccaga accctgtcag caacagttct

601      gactctgtca ctgtccagca gccatgtaca gacactccaa gcttccatcc tcgccatgct

661      gtgttgccag gaggattggc cgtgctcttt ctgcttattc tcattccgat gttggcattt

721      ctgttccgtt tgtataagag aaggcgagac aggattgtcc tggaagcaga tgatgtctca

781      aagaaaacag tatatgctgt agtttcaaga aatgctcaac ccacagagtc cagaatctat

841      gatgaaatcc ctcagtccaa gatgctgtcc tgtaagaaag atccggtgac caccatttat

901      tcctcagtgc agctttctga gaagatgaag gaaaccaaca tgaaggacag aagtctgcct

961      aaggctttgg gtaatgaaat tgttgtctag
Nucleotide sequence in FASTA format (without gaps) CD84*01

Amino acid sequence

1        MAQRHLWIWF LCLQTWSEAA GKDADPVVMN GILGESVTFL LNIQEPKKID NIAWTSQSSV

61       AFIKPGVNKA EVTITQGTYK GRIEIIDQKY DLVIRDLRME DAGTYKADIN EENEETITKI

121      YYLHIYRRLK TPKITQSLIS SLNNTCNITL TCSVEKEEKD VTYSWSPFGE KSNVLQIVHS

181      PMDQKLTYTC TAQNPVSNSS DSVTVQQPCT DTPSFHPRHA VLPGGLAVLF LLILIPMLAF

241      LFRLYKRRRD RIVLEADDVS KKTVYAVVSR NAQPTESRIY DEIPQSKMLS CKKDPVTTIY

301      SSVQLSEKMK ETNMKDRSLP KALGNEIVV*
Amino acid sequence in FASTA format (without gap) CD84*01

Legend: