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Other CD2 Family entries

IMGT RPI entry from gene to protein for Mus musculus Ly9

Citing IMGT RPI entry for Ly9

Duprat, E. et al. IMGT standardization for alleles and mutations of the V-LIKE-DOMAINs and C-LIKE-DOMAINs of the immunoglobulin superfamily, Recent Research Developments in Human Genetics, 2, 111-136 (2004) pdf with permission from Research Signpost

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

Ly9 Gene exon/intron organization

Legend:

Number of alleles: 9

IMGT reference alleles

Allele names Gene functionality Strains IMGT reference sequences
Exons Accession numbers Molecule type
Ly9*01 F C57BL/6 EX1-10 AF244131 gDNA
Ly9*02 F C57BL/6 EX1-10 AK042288 cDNA partial
Ly9*03 F C57BL/6 EX1-10 M84412 cDNA (2) splicing B
Ly9*04 F BABL/c EX1-10 AF244130 cDNA
Ly9*05 F 129/Sv EX1-10 AF245117, AF245506, AF245118, AF245507, AF245508, AF245509, AF245510, AF246699, AF246700, AF246701 gDNA
Ly9*06 F NOD EX1, EX3-10 AK088815 cDNA Splicing C
Ly9*07 F C57BL/6NcrL BC055380 cDNA partial
Ly9*08 F C57BL/6NcrL BC066212 cDNA partial
Ly9*09 F MEL/MpJ AB196804 cDNA

IMGT reference sequences (in FASTA format) for the allele(s): Ly9*01 to Ly9*09

Other sequences from the literature

Allele names Gene functionality Strains IMGT reference sequences
Exons Accession numbers Molecule type
Ly9*09 F NZB/B1NJ EX1-10 AB196805 cDNA
NZW/LacJ EX1-10 AB196806
BXSB/MpJ EX1-10 AB196807
NMRI EX1-10 BC095921

Corresponding protein database accession numbers

Allele Names Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
Ly9*01 AF244131 Q01965 654 aa 1
Ly9*02 AK042288 Tr:Q8C9E4 539 aa 1 partial
Ly9*03 M84412 630 aa 2
Ly9*04 AF244130 654 aa 1
Ly9*05 AF245117, AF245506, AF245118, AF245507, AF245508, AF245509, AF245510, AF246699, AF246700, AF246701 654 aa 1
Ly9*06 AK088815 Tr:Q8C2D4 544 aa 3
Ly9*07 BC055380 Tr:Q7TMP7 649 aa 1 partial
Ly9*08 BC066212 Tr:Q6NZB6 645 aa 1 partial
Ly9*09 AB196804 Tr:Q4VBG4 654 aa 1
IMGT notes:
  1. (1) Many alleles with multiple variations, hence description of allelic differences can not be mentioned.
  2. (2) Splicing B (630 aa). Uses an alternative start codon 21 codons away from normal start codon. In EX10 an insertion at position 41 (41^>ins^g). This cause the frame shift and termination before 3 codons than the normal stop codon.
  3. (3) Splicing C (544 aa). No EX2.
IMGT references:
  1. [1] Tovar V. et al., Immunogenetics 51, 788-793 (2000) . PMID: 10970093
  2. [2] Sandrin M.S. et al., Immunogenetics 43, 13-19 (1996) . PMID: 8537117

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

Ly9*01: AF244131(g)

Nucleotide sequence

1        atggcggatc taaagagata ttggtgtgac tgggctctag gtccactctc tgaaaatcca

61       agaatgagtc agcagcagat attttctccc attctttgga ttcctctcct cttcctactc

121      atggggctcg gagcctctgg aaaggaaaca cctccaacag tgatatcagg gatgctaggg

181      ggttctgtga ctttctccct aaacatctca aaggatgcag agattgagca tatcatctgg

241      aattgtcccc caaaggctct tgctttagta ttctacaaaa aagatataac tattctggac

301      aaaggatata atggcagact caaagtcagc gaagatggct actccttgta catgagcaac

361      ctaaccaaaa gtgattcagg atcctaccat gctcagataa accaaaagaa tgttatcctc

421      accacaaata aagagttcac actgcacatc tatgagaagc tccagaagcc tcagatcatc

481      gtggaatctg tgaccccatc cgatactgat tcctgcacct tcaccctaat ctgcactgta

541      aaggggacaa aggacagtgt ccagtacagc tggacccgag aggacaccca tttaaataca

601      tacgatggaa gccacaccct cagggtttcc cagagtgtct gtgaccccga cctaccctat

661      acctgcaaag cctggaatcc agtcagccaa aacagctccc aacctgtccg catctggcaa

721      ttctgcacag gagcctccag aagaaaaaca gcagcgggga agactgtggt aggaatcctg

781      ggagagccag tgaccctgcc cttggaattt cgggccactc gggccacaaa gaatgttgtc

841      tgggtgttta acacgtcggt tatcagccaa gaacggagag gagcagcaac agcggattct

901      cgccgtaagc ccaaaggttc tgaagaacgg agggtgagga cctctgacca ggaccaatcc

961      ctgaagatca gccagctgaa gatggaggac gcgggcccct accatgccta tgtgtgctca

1021     gaggcctccc gagaccccag tgtgagacat ttcaccttgc ttgtctacaa gagactggag

1081     aagtccagtg tcaccaagag tcctgtgcac atgatgaacg gaatctgcga ggttgtcctg

1141     acctgttcag tggacggtgg tggaaacaat gtgacataca catggatgcc tctacaaaac

1201     aaagctgtca tgtcccaagg gaagtcgcac ctcaacgtct cctgggaaag tggtgaacac

1261     ctgcccaact tcacatgcac agcccataac cctgtcagca acagctccag ccagttttct

1321     tctgggacca tctgttcagg ccctgagaga aacaagaggt tttggctcct gctcctcctg

1381     gttttgctct tgttgatgct cattggcggt tacttcattt tgaggaaaaa gaagcagtgt

1441     tcgtctttgg ccaccaggta cagacaagcg gaggtcccag ctgaaatacc agaaacccca

1501     actggccatg gacaattttc tgtgctctcc caacggtatg agaaactaga catgtctgct

1561     aagaccacca ggcatcagcc tacacccacc tcagatacca gctctgagag cagcgcaaca

1621     acagaagagg atgacgaaaa gaccagaatg cacagcactg ctaatagtag aaatcaggtg

1681     tatgacttgg tcacccatca ggacattgca catgccttgg cctatgaggg gcaagtagaa

1741     tatgaagcaa tcactccata tgataaagtg gatgggtcta tggatgaaga ggacatggca

1801     tatatacaag tgtccctgaa tgtgcaggga gagaccccac ttcctcagaa gaaagaagac

1861     tcaaatacaa tctactgctc tgtgcagaag cctaaaaaga cggcacaaac accacagcaa

1921     gatgctgagt ctcctgaaac ccctacctat gaaaatttca cctga
Nucleotide sequence in FASTA format (without gaps) Ly9*01

Amino acid sequence

1        MADLKRYWCD WALGPLSENP RMSQQQIFSP ILWIPLLFLL MGLGASGKET PPTVISGMLG

61       GSVTFSLNIS KDAEIEHIIW NCPPKALALV FYKKDITILD KGYNGRLKVS EDGYSLYMSN

121      LTKSDSGSYH AQINQKNVIL TTNKEFTLHI YEKLQKPQII VESVTPSDTD SCTFTLICTV

181      KGTKDSVQYS WTREDTHLNT YDGSHTLRVS QSVCDPDLPY TCKAWNPVSQ NSSQPVRIWQ

241      FCTGASRRKT AAGKTVVGIL GEPVTLPLEF RATRATKNVV WVFNTSVISQ ERRGAATADS

301      RRKPKGSEER RVRTSDQDQS LKISQLKMED AGPYHAYVCS EASRDPSVRH FTLLVYKRLE

361      KSSVTKSPVH MMNGICEVVL TCSVDGGGNN VTYTWMPLQN KAVMSQGKSH LNVSWESGEH

421      LPNFTCTAHN PVSNSSSQFS SGTICSGPER NKRFWLLLLL VLLLLMLIGG YFILRKKKQC

481      SSLATRYRQA EVPAEIPETP TGHGQFSVLS QRYEKLDMSA KTTRHQPTPT SDTSSESSAT

541      TEEDDEKTRM HSTANSRNQV YDLVTHQDIA HALAYEGQVE YEAITPYDKV DGSMDEEDMA

601      YIQVSLNVQG ETPLPQKKED SNTIYCSVQK PKKTAQTPQQ DAESPETPTY ENFT*
Amino acid sequence in FASTA format (without gap) Ly9*01

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