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IMGT RPI entry from gene to protein for Mus musculus PDCD1

Citing IMGT RPI entry for PDCD1

Duprat, E. et al. IMGT standardization for alleles and mutations of the V-LIKE-DOMAINs and C-LIKE-DOMAINs of the immunoglobulin superfamily, Recent Research Developments in Human Genetics, 2, 111-136 (2004) pdf with permission from Research Signpost

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

PDCD1 Gene exon/intron organization

Legend:

Number of alleles: 1

IMGT reference alleles

Allele names Gene functionality IMGT reference sequences
Exons Accession numbers Molecule type
PDCD1*01 F EX1-5 X67914 [1] cDNA

IMGT reference sequences (in FASTA format) for the allele(s): PDCD1*01

Other sequences from the literature

Allele names Gene functionality IMGT reference sequences
Clones Exons Accession numbers Molecule type
PDCD1*01 F EX1-5 AK039828 cDNA
MGC:155495 EX1-5 BC119179
MGC:155839 EX1-5 BC120602

Corresponding protein database accession numbers

Allele names Accession numbers Number of amino acids Protein isoform
Nucleotide Databases Protein Databases
PDCD1*01 X67914 Q02242 288 aa 1
NM_008798 NP_032824 288 aa 1
IMGT references:
  1. [1] Ishida.Y. et al, EMBO J. (11), 3887-3895 (1992). PMID: 1396582

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

PDCD1*01: X67914(c)

Nucleotide sequence

1        atgtgggtcc ggcaggtacc ctggtcattc acttgggctg tgctgcagtt gagctggcaa

61       tcagggtggc ttctagaggt ccccaatggg ccctggaggt ccctcacctt ctacccagcc

121      tggctcacag tgtcagaggg agcaaatgcc accttcacct gcagcttgtc caactggtcg

181      gaggatctta tgctgaactg gaaccgcctg agtcccagca accagactga aaaacaggcc

241      gccttctgta atggtttgag ccaacccgtc caggatgccc gcttccagat catacagctg

301      cccaacaggc atgacttcca catgaacatc cttgacacac ggcgcaatga cagtggcatc

361      tacctctgtg gggccatctc cctgcacccc aaggcaaaaa tcgaggagag ccctggagca

421      gagctcgtgg taacagagag aatcctggag acctcaacaa gatatcccag cccctcgccc

481      aaaccagaag gccggtttca aggcatggtc attggtatca tgagtgccct agtgggtatc

541      cctgtattgc tgctgctggc ctgggcccta gctgtcttct gctcaacaag tatgtcagag

601      gccagaggag ctggaagcaa ggacgacact ctgaaggagg agccttcagc agcacctgtc

661      cctagtgtgg cctatgagga gctggacttc cagggacgag agaagacacc agagctccct

721      accgcctgtg tgcacacaga atatgccacc attgtcttca ctgaagggct gggtgcctcg

781      gccatgggac gtaggggctc agctgatggc ctgcagggtc ctcggcctcc aagacatgag

841      gatggacatt gttcttggcc tctttga
Nucleotide sequence in FASTA format (without gaps) PDCD1*01

Amino acid sequence

1        MWVRQVPWSF TWAVLQLSWQ SGWLLEVPNG PWRSLTFYPA WLTVSEGANA TFTCSLSNWS

61       EDLMLNWNRL SPSNQTEKQA AFCNGLSQPV QDARFQIIQL PNRHDFHMNI LDTRRNDSGI

121      YLCGAISLHP KAKIEESPGA ELVVTERILE TSTRYPSPSP KPEGRFQGMV IGIMSALVGI

181      PVLLLLAWAL AVFCSTSMSE ARGAGSKDDT LKEEPSAAPV PSVAYEELDF QGREKTPELP

241      TACVHTEYAT IVFTEGLGAS AMGRRGSADG LQGPRPPRHE DGHCSWPL*
Amino acid sequence in FASTA format (without gap) PDCD1*01

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