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Other CD2 Family entries

IMGT RPI entry from gene to protein for Mus musculus SLAMF6

Citing IMGT RPI entry for SLAMF6

Duprat, E. et al. IMGT standardization for alleles and mutations of the V-LIKE-DOMAINs and C-LIKE-DOMAINs of the immunoglobulin superfamily, Recent Research Developments in Human Genetics, 2, 111-136 (2004) pdf with permission from Research Signpost

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

SLAMF6 Gene exon/intron organization

Legend:

Number of alleles: 3

IMGT reference alleles

Allele names Gene functionality Strains IMGT reference sequences
Exons Accession numbers Molecule type
SLAMF6*01 F C57BL/6J EX1-8 AF248636 [1] cDNA
SLAMF6*02 F NZB/BINJ EX1-8 BC030031 cDNA (1)
SLAMF6*03 F C57BL/6J EX1-8 AB196809 cDNA (2)

IMGT reference sequences (in FASTA format) for the allele(s): SLAMF6*01 to SLAMF6*03

Other sequences from the literature

Allele names Gene functionality Strains IMGT reference sequences
Exons Accession numbers Molecule type
SLAMF6*01 F BXSB/MpJ EX1-8 AB196811 cDNA
NZW/LacJ EX1-8 AB196810
MRL/MpJ EX1-7,9 AB196808
C57BL/6 EX1-7,9 AF248635 cDNA splicing B (3)
EX1-7,9 AB196836 cDNA splicing B
EX1-7,9 NM_030710

Corresponding protein database accession numbers

Allele names Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
SLAMF6*01 AF248636 Tr:Q9ET39 351aa 1
SLAMF6*02 BC030031 Tr:Q9ET39 351aa 1
SLAMF6*03 AB196809 Tr:Q18PJ2 351aa 1
SLAMF6*01 AB196836 Tr:Q18PG5 331aa 2
NM_030710 NP_109635 331aa 2
IMGT notes:
  1. (1) In EX3 [D2] 6t>c, numbering according to IMGT unique numbering for C-LIKE-DOMAIN and in EX4 65a>t.
  2. (2) In EX2 [D1] 320c>t, 107T>I, numbering according to IMGT unique numbering for V-LIKE-DOMAIN and in EX3 [D2] 6t>c and 364g>a, numbering according to IMGT unique numbering for C-LIKE-DOMAIN.
  3. (3) Splicing B (331 aa). No EX8 and utilize a novel exon (EX9) of 15 bases.
IMGT references:
  1. [1] Peck S.R. and Ruley H.E, Immunogenetics 52, 63-72 (2000) . PMID: 11132158

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

SLAMF6*01: AF248636(c)

Nucleotide sequence

1        atggctgtct caagggctcc agcacccgac tccgcctgtc agaggatggt ctggctcttt

61       ccacttgtct tctgcctcgg ctcagggagt gaagtttcac agagcagctc agacccccag

121      ctaatgaatg gcgttctagg agagtctgca gttcttcctc taaagcttcc tgcagggaag

181      atagccaata tcatcatctg gaattatgaa tgggaagcgt cacaagtcac tgccctcgtt

241      atcaacctaa gtaatcctga aagtccacaa atcatgaaca ctgatgtaaa gaagagactg

301      aacatcaccc agtcctactc cctgcaaatc agcaacctta ccatggcaga cacaggatca

361      tacactgcgc agataaccac aaaggactct gaagtgatca ccttcaaata tattctgagg

421      gtctttgaac gattgggtaa cttagaaact accaactata ctctcctgct agagaatggg

481      acctgccaga tacacctggc ctgtgttttg aagaatcaaa gtcaaactgt ctcagttgag

541      tggcaagcca caggaaacat ctctttagga ggaccaaatg tcactatctt ttgggacccg

601      aggaattctg gtgaccagac ttacgtctgc agagccaaga atgctgtcag caatttgtca

661      gtctctgttt cgacccagag tctctgcaaa ggggttctaa ctaatccacc ctggaatgca

721      gtatggttta tgactacaat ttcaataatc agtgcagtca tactcatctt tgtgtgctgg

781      agcatacatg tttggaagag aagaggttct cttcctttga ctagccaaca tccagagtcc

841      tcccagagca cagatggccc aggctctcca gggaacactg tgtatgcaca agtcactcgt

901      ccaatgcagg aaatgaaaat cccaaaacct atcaaaaatg actccatgac aatttactcc

961      atagttaatc attccagaga ggaaacagtg gctttaaccg gctataacca acccattacc

1021     ctgaaggtta acactttaat caactataac tcctga
Nucleotide sequence in FASTA format (without gaps) SLAMF6*01

Amino acid sequence

1        MAVSRAPAPD SACQRMVWLF PLVFCLGSGS EVSQSSSDPQ LMNGVLGESA VLPLKLPAGK

61       IANIIIWNYE WEASQVTALV INLSNPESPQ IMNTDVKKRL NITQSYSLQI SNLTMADTGS

121      YTAQITTKDS EVITFKYILR VFERLGNLET TNYTLLLENG TCQIHLACVL KNQSQTVSVE

181      WQATGNISLG GPNVTIFWDP RNSGDQTYVC RAKNAVSNLS VSVSTQSLCK GVLTNPPWNA

241      VWFMTTISII SAVILIFVCW SIHVWKRRGS LPLTSQHPES SQSTDGPGSP GNTVYAQVTR

301      PMQEMKIPKP IKNDSMTIYS IVNHSREETV ALTGYNQPIT LKVNTLINYN S*
Amino acid sequence in FASTA format (without gap) SLAMF6*01

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