IMGT/3Dstructure-DB FLAT FILES: RELEASE NOTES

Release

201205-20, mai 2012

Release 201205-20

IMGT entry type Number of entries
INN 137
KAB 335
PDB 2214

IMGT receptor type Number of entries
FPIA 10
IG 1893
MH 522
RPI 305
TR 149

species IMGT entry type IMGT receptor type Number of entries
Aquifex aeolicus INN IG 2
Aquifex aeolicus KAB IG 1
Aquifex aeolicus PDB IG 3
Aquifex aeolicus PDB MH 1
Aquifex aeolicus PDB RPI 1
Bos taurus PDB MH 1
Bos taurus PDB RPI 1
Branchiostoma floridae PDB RPI 2
Chimeric INN IG 14
Chimeric PDB IG 58
Chimeric PDB RPI 1
Chimeric PDB TR 19
Chlamydia trachomatis INN IG 2
Chlamydia trachomatis KAB IG 1
Chlamydia trachomatis PDB IG 3
Chlamydia trachomatis PDB MH 1
Chlamydia trachomatis PDB RPI 1
Cricetidae sp PDB IG 1
Ctenopharyngodon idella PDB MH 1
Escherichia coli INN IG 2
Escherichia coli KAB IG 1
Escherichia coli PDB IG 3
Escherichia coli PDB MH 1
Escherichia coli PDB RPI 1
Ginglymostoma cirratum PDB IG 6
Homo sapiens INN FPIA 5
Homo sapiens INN IG 54
Homo sapiens KAB IG 145
Homo sapiens PDB FPIA 4
Homo sapiens PDB IG 438
Homo sapiens PDB MH 368
Homo sapiens PDB RPI 236
Homo sapiens PDB TR 83
Human poliovirus 1 Mahoney INN IG 2
Human poliovirus 1 Mahoney KAB IG 1
Human poliovirus 1 Mahoney PDB IG 3
Human poliovirus 1 Mahoney PDB MH 1
Human poliovirus 1 Mahoney PDB RPI 1
Humanized INN FPIA 1
Humanized INN IG 56
Humanized PDB IG 35
Hyalophora cecropia PDB RPI 1
Lama glama PDB IG 27
Macaca mulatta PDB MH 1
Meningococcus INN IG 2
Meningococcus KAB IG 1
Meningococcus PDB IG 3
Meningococcus PDB MH 1
Meningococcus PDB RPI 1
Methanocaldococcus jannaschii INN IG 2
Methanocaldococcus jannaschii KAB IG 1
Methanocaldococcus jannaschii PDB IG 3
Methanocaldococcus jannaschii PDB MH 1
Methanocaldococcus jannaschii PDB RPI 1
Mus musculus INN IG 6
Mus musculus INN RPI 1
Mus musculus KAB IG 184
Mus musculus PDB IG 782
Mus musculus PDB MH 156
Mus musculus PDB RPI 51
Mus musculus PDB TR 46
Mycobacterium bovis INN IG 2
Mycobacterium bovis KAB IG 1
Mycobacterium bovis PDB IG 3
Mycobacterium bovis PDB MH 1
Mycobacterium bovis PDB RPI 1
Norovirus INN IG 2
Norovirus KAB IG 1
Norovirus PDB IG 3
Norovirus PDB MH 1
Norovirus PDB RPI 1
Orectolobus maculatus PDB IG 3
Paracoccus denitrificans INN IG 2
Paracoccus denitrificans KAB IG 1
Paracoccus denitrificans PDB IG 3
Paracoccus denitrificans PDB MH 1
Paracoccus denitrificans PDB RPI 1
Plasmodium falciparum INN IG 2
Plasmodium falciparum KAB IG 1
Plasmodium falciparum PDB IG 3
Plasmodium falciparum PDB MH 1
Plasmodium falciparum PDB RPI 1
Rattus norvegicus PDB IG 16
Rattus norvegicus PDB MH 3
Rattus norvegicus PDB RPI 9
Rattus norvegicus PDB TR 1
Simian immunodeficiency virus, SIV INN IG 2
Simian immunodeficiency virus, SIV KAB IG 1
Simian immunodeficiency virus, SIV PDB IG 3
Simian immunodeficiency virus, SIV PDB MH 1
Simian immunodeficiency virus, SIV PDB RPI 1
Streptococcus INN IG 2
Streptococcus KAB IG 1
Streptococcus PDB IG 3
Streptococcus PDB MH 1
Streptococcus PDB RPI 1
Streptomyces lividans INN IG 2
Streptomyces lividans KAB IG 1
Streptomyces lividans PDB IG 3
Streptomyces lividans PDB MH 1
Streptomyces lividans PDB RPI 1
Thermus aquaticus INN IG 2
Thermus aquaticus KAB IG 1
Thermus aquaticus PDB IG 3
Thermus aquaticus PDB MH 1
Thermus aquaticus PDB RPI 1
Thermus themophilus INN IG 2
Thermus themophilus KAB IG 1
Thermus themophilus PDB IG 3
Thermus themophilus PDB MH 1
Thermus themophilus PDB RPI 1
Trypanosoma brucei INN IG 2
Trypanosoma brucei KAB IG 1
Trypanosoma brucei PDB IG 3
Trypanosoma brucei PDB MH 1
Trypanosoma brucei PDB RPI 1

Files

The documentation files on tape (those ending with a file extension of

.txt

.lst

) are designed to be easily printable. They have a maximum record length of 80 bytes. Files ending with .html can be browsed whith a WWW browser, such as Netscape or Internet Explorer.

This release contains the files shown below. File sizes are given as the number of records.

File Number     File Name       Description
----------- --------------- -------------------------------
 1	IMGT3DFlatFiles.tgz		IMGT/3D and 2Dstructure-DB flat files (Renumbered IMGT Files)
 2	IMGT3DNumComp.tgz		IMGT/3D and 2Dstructure-DB numbering comparison files
 3	entries.lst				List of entries
 4	RELEASE					Current Release number
 5	userman_doc_3ddb.html	User Manual
 6	relnotes_3DDB.html		This file (Short description of the contents of the database)
 7	README					Readme file

The continued development and improvement of the database depend to a significant degree on user feedback. If you find errors, omissions, or something you think could be done better, please don't hesitate to contact François Ehrenmann (Francois.Ehrenmann@igh.cnrs.fr) or Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr.

IMGT receptor type	Number of entries
FPIA	10
IG	1893
MH	522
RPI	305
TR	149

species	IMGT entry type	IMGT receptor type	Number of entries
Aquifex aeolicus	INN	IG	2
Aquifex aeolicus	KAB	IG	1
Aquifex aeolicus	PDB	IG	3
Aquifex aeolicus	PDB	MH	1
Aquifex aeolicus	PDB	RPI	1
Bos taurus	PDB	MH	1
Bos taurus	PDB	RPI	1
Branchiostoma floridae	PDB	RPI	2
Chimeric	INN	IG	14
Chimeric	PDB	IG	58
Chimeric	PDB	RPI	1
Chimeric	PDB	TR	19
Chlamydia trachomatis	INN	IG	2
Chlamydia trachomatis	KAB	IG	1
Chlamydia trachomatis	PDB	IG	3
Chlamydia trachomatis	PDB	MH	1
Chlamydia trachomatis	PDB	RPI	1
Cricetidae sp	PDB	IG	1
Ctenopharyngodon idella	PDB	MH	1
Escherichia coli	INN	IG	2
Escherichia coli	KAB	IG	1
Escherichia coli	PDB	IG	3
Escherichia coli	PDB	MH	1
Escherichia coli	PDB	RPI	1
Ginglymostoma cirratum	PDB	IG	6
Homo sapiens	INN	FPIA	5
Homo sapiens	INN	IG	54
Homo sapiens	KAB	IG	145
Homo sapiens	PDB	FPIA	4
Homo sapiens	PDB	IG	438
Homo sapiens	PDB	MH	368
Homo sapiens	PDB	RPI	236
Homo sapiens	PDB	TR	83
Human poliovirus 1 Mahoney	INN	IG	2
Human poliovirus 1 Mahoney	KAB	IG	1
Human poliovirus 1 Mahoney	PDB	IG	3
Human poliovirus 1 Mahoney	PDB	MH	1
Human poliovirus 1 Mahoney	PDB	RPI	1
Humanized	INN	FPIA	1
Humanized	INN	IG	56
Humanized	PDB	IG	35
Hyalophora cecropia	PDB	RPI	1
Lama glama	PDB	IG	27
Macaca mulatta	PDB	MH	1
Meningococcus	INN	IG	2
Meningococcus	KAB	IG	1
Meningococcus	PDB	IG	3
Meningococcus	PDB	MH	1
Meningococcus	PDB	RPI	1
Methanocaldococcus jannaschii	INN	IG	2
Methanocaldococcus jannaschii	KAB	IG	1
Methanocaldococcus jannaschii	PDB	IG	3
Methanocaldococcus jannaschii	PDB	MH	1
Methanocaldococcus jannaschii	PDB	RPI	1
Mus musculus	INN	IG	6
Mus musculus	INN	RPI	1
Mus musculus	KAB	IG	184
Mus musculus	PDB	IG	782
Mus musculus	PDB	MH	156
Mus musculus	PDB	RPI	51
Mus musculus	PDB	TR	46
Mycobacterium bovis	INN	IG	2
Mycobacterium bovis	KAB	IG	1
Mycobacterium bovis	PDB	IG	3
Mycobacterium bovis	PDB	MH	1
Mycobacterium bovis	PDB	RPI	1
Norovirus	INN	IG	2
Norovirus	KAB	IG	1
Norovirus	PDB	IG	3
Norovirus	PDB	MH	1
Norovirus	PDB	RPI	1
Orectolobus maculatus	PDB	IG	3
Paracoccus denitrificans	INN	IG	2
Paracoccus denitrificans	KAB	IG	1
Paracoccus denitrificans	PDB	IG	3
Paracoccus denitrificans	PDB	MH	1
Paracoccus denitrificans	PDB	RPI	1
Plasmodium falciparum	INN	IG	2
Plasmodium falciparum	KAB	IG	1
Plasmodium falciparum	PDB	IG	3
Plasmodium falciparum	PDB	MH	1
Plasmodium falciparum	PDB	RPI	1
Rattus norvegicus	PDB	IG	16
Rattus norvegicus	PDB	MH	3
Rattus norvegicus	PDB	RPI	9
Rattus norvegicus	PDB	TR	1
Simian immunodeficiency virus, SIV	INN	IG	2
Simian immunodeficiency virus, SIV	KAB	IG	1
Simian immunodeficiency virus, SIV	PDB	IG	3
Simian immunodeficiency virus, SIV	PDB	MH	1
Simian immunodeficiency virus, SIV	PDB	RPI	1
Streptococcus	INN	IG	2
Streptococcus	KAB	IG	1
Streptococcus	PDB	IG	3
Streptococcus	PDB	MH	1
Streptococcus	PDB	RPI	1
Streptomyces lividans	INN	IG	2
Streptomyces lividans	KAB	IG	1
Streptomyces lividans	PDB	IG	3
Streptomyces lividans	PDB	MH	1
Streptomyces lividans	PDB	RPI	1
Thermus aquaticus	INN	IG	2
Thermus aquaticus	KAB	IG	1
Thermus aquaticus	PDB	IG	3
Thermus aquaticus	PDB	MH	1
Thermus aquaticus	PDB	RPI	1
Thermus themophilus	INN	IG	2
Thermus themophilus	KAB	IG	1
Thermus themophilus	PDB	IG	3
Thermus themophilus	PDB	MH	1
Thermus themophilus	PDB	RPI	1
Trypanosoma brucei	INN	IG	2
Trypanosoma brucei	KAB	IG	1
Trypanosoma brucei	PDB	IG	3
Trypanosoma brucei	PDB	MH	1
Trypanosoma brucei	PDB	RPI	1