IMGT Index

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Search criteria

Search criteria for querying IMGT/LIGM-DB are the following:

• accession number, mnemonic, definition, creation date, length, annotation level (in "Catalogue")
• taxonomy (species and classification level), nucleic acid type, receptor and chain type, functionality, specificity, group and subgroup (in "Taxonomy")
• standardized keywords (in "Keywords")
• standardized LIGM-DB labels (in "Annotation labels")
• authors, publication type, journal, year, title, Medline reference number (in "References").

Selection is displayed at the top of the resulting sequences pages, so the users can check their own queries.

Users have the possibility to modify their request or consult the results. They can:

• add new conditions to increase or decrease the number of resulting sequences
• view details concerning the selected sequences and choose among eight possibilities: IMGT annotations, IGMT flat file, coding regions with protein translation, catalogue and external references, sequence in dump format, sequence in FASTA format, sequence with three reading frames, EMBL flat file
• search for sequence fragments corresponding to a particular label [1].

Reference:

[1]	Lefranc, M.-P. et al., Nucleic Acids Res., 27, 209-212 (1999) PMID:9847182, LIGM:209.

See also:

• IMGT/LIGM-DB

Created: 07/01/2000
Last updated: Wednesday, 29-Jun-2011 17:02:00 CEST
Authors: Véronique Giudicelli and Marie-Paule Lefranc
Editors: Manuel Ruiz and Chantal Ginestoux
Contact: Marie-Paule Lefranc

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Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Research, 27, 209-212 (1999) Cover of NAR; Ruiz, M. et al., Nucleic Acids Research, 28, 219-221 (2000); Lefranc, M.-P., Nucleic Acids Research, 29, 207-209 (2001); Lefranc, M.-P., Nucleic Acids Res., 31, 307-310 (2003); Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5, 45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33, D593-D597 (2005) Full text; Lefranc, M.-P. et al., Nucleic Acids Research 2009 37: D1006-D1012; doi:10.1093/nar/gkn838 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

     

IMGT founder and director: Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr
Bioinformatics manager: Véronique Giudicelli Veronique.Giudicelli@igh.cnrs.fr
Computer manager: Patrice Duroux Patrice.Duroux@igh.cnrs.fr
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