Gene table: Human (Homo sapiens) TRBV

Print of this table: Folch, G. and Lefranc, M.-P., Exp. Clin. Immunogenet., 17, 42-54 (2000) PMID:10686482

Click here to see Part 2 - Orphons on chromosome 9 (9p21)

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T), and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between:
- parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
- brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Rearranged (R) and transcribed (T) information are from Assignment of rearranged cDNAs and gDNAs to germline genes: Human TRBV

Reference sequences in bold have been mapped: "mapped" refers to sequences which have been obtained from clones (phages, cosmids, YACs...) either by subcloning or PCR, and does not apply to sequences obtained directly from genomic DNA.

The original L36092 sequence (684973 bp) has been split in EMBL into three sequences of 267156 bp (U66059), 215422 bp (U66060) and 232650 bp (U66061), L36092 has become secondary accession number of U66059, U66060 and U66061.
In IMGT, the original sequence L36092 which is fully annotated has also been kept as primary accession number, in addition to U66059, U66060 and U66061.

Click on an accession number to get the sequence and additional information (IMGT annotations, IMGT flat file, Coding regions...).

For a given gene name, each horizontal line corresponds to a different allele. For more information, see Alignments of alleles and Tables of alleles (IMGT Repertoire).


Part 1 - Sequences assigned to germline TRBV genes at 7q34 by sequence comparison

TRBV subgroup TRBV
gene name		 Fct R T Pr Position in L36092(a) Position in L36092(b) Reference sequences Accession numbers Sequences from the literature
1 TRBV1 P(1) - -   91000-92750 91557-92006 V1 L36092/U66059 [11]  
2 TRBV2 F + + + 92751-97500 93552-93986 V2 L36092/U66059 [11]  
(F) + + +     Vbeta23 M62379 [19]#c  
(F) + + +     Vbeta22 M64351 [20]#c  
3 TRBV3-1 F + + + 97501-103500 101150-101609 V9S1 U07977 [14] V3-1[L36092/U66059][11]
(F) + + +     Vbeta9.n L06889 [21]#c  
TRBV3-2 P(2) + +   147001-153700 151879-152338 V3-2 L36092/U66059 [11]  
P(2) + +       V9S2P U07978 [14]  
(P)(2) + +       Vbeta-VW114 M33240 [48]#c  
4 TRBV4-1 F + +   103501-110000 105774-106227 V7S1 U07977 [14] V4-1[L36092/U66059][11]
(F) + +       Vbeta7.1 M13855 [22]#c  
TRBV4-2 F + +   131001-140300 138078-138531 V7S2 U07975 [14] V7S2[U07976][14], V7S2[U07978][14], V4-2[L36092/U66059][11],
V4-2[L36190][11], V7S3[AF009660][41]
(F) + +       Vbeta7 X58811 [23]#c  
TRBV4-3 F + +   153701-160000 155338-155791 V7S3 U07978 [14] V4-3[L36092/U66059][11]
(F) + +       Vbeta7 X58812 [23]#c  
(F) + +       Vbeta7.n2 L06888 [21]#c  
(F) + +       Vbeta7.2b X57616 [24]#c  
5 TRBV5-1 F + + + 110001-117500 113622-114091 V5-1 L36092/U66059 [11]  
(F) + +       ph24 M14271 [10]#c  
TRBV5-2 P(3) - -   180001-194000 187166-187605 V5-2 L36092/U66059 [11] [AF009660][41]
TRBV5-3 ORF(4) - -   202001-205500 203911-204377 Vbeta5.5 X61439 [4] V5-3[L36092/U66059][11]
ORF(4) - -       V5S5 AF009660 [41]  
TRBV5-4 F + +   274001-280000 277826-278290 V5-4 L36092/U66060 [11] V5S5[AF009663][41], V5S6[AF009662][41]
(F) + +       Vbeta5.6 X57615 [24]#c  
(F) + +       Vbeta5.5 S50547 [25]#  
(F) + +       Vbeta5 X58804 [23]#c  
TRBV5-5 F + + + 282251-300000 297271-297735 V5-5 L36092/U66060 [11] [AF009663][41]
(F) + +       Vbeta5.3a X57611 [24]#c  
(F) + +       Vbeta5 X58801 [23]#c  
TRBV5-6 F + + + 311001-319000 314783-315248 V5-6 L36092/U66060 [11] [AF009663][41]
TRBV5-7 ORF(5) - -   330001-338000 334800-335266 V5-7 L36092/U66060 [11] [AF009663][41], BV5S7[L26226][12](19)°
TRBV5-8 F + +   350001-360000 354936-355402 V5-8 L36092/U66060 [11] [AF009663][41]
(F) + +       Vbeta5 X58803 [23]#c  
6 TRBV6-1 F + +   117501-123000 120903-121335 Vbeta13.3 X61446 [4] V6-1[L36092/U66059][11]
TRBV6-2 F + +   140301-147000 141898-142330 Vbeta13.2 X61445 [4] V13S2[U07975][14], V13S2[U07976][14], V13S2[U07978][14],
V6-2[L36092/U66059][11], V6-2[L36190][11], V13S2[AF009660][41],
V13S2[X75418][47](33)°, V13S2[X75419][47](33)°
(P)(10) + +       Vbeta.HPB-2 M31347 [26]#g  
(P)(10) + +         Weiss [27]#  
TRBV6-3 F + +   160001-166000 163579-164011 V13S2 U07978 [14] V6-3[L36092/U66059][11], BV13S9[L26229][12](19)°
TRBV6-4 F + +   194001-197000 195522-195956 Vbeta13.5 X61653 [4] V6-4[L36092/U66059][11]
F 
           V13S5 AF009660 [41]  
TRBV6-5 F + + + 260001-268000 265721-266156 V6-5 L36092/U66059/U66060 [11] V13S1[AF009662][41], [AF009663][41]
TRBV6-6 F + + + 280001-286500 284296-284728 V6-6 L36092/U66060 [11]  
F + +       V13S6 AF009662 [41] [AF009663][41]
(F) + +       Vbeta13 X58815 [23]#c  
(F) + +       Vbeta13.4 X74848 [28]#c  
(F) + +       Vbeta13.n3 L06892 [21]#c  
TRBV6-7 ORF(6) + -   300001-304500 302579-303011 V6-7 L36092/U66060 [11] [AF009663][41], BV13S8[L26227][12](19)°
TRBV6-8 F + -   319001-324500 322095-322523 V6-8 L36092/U66060 [11] [AF009663][41], BV13S7[L26228][12](19)°
TRBV6-9 F - -   338001-344500 342106-342537 Vbeta13.4 X61447 [4] V6-9[L36092/U66060][11], [AF009663][41]
7 TRBV7-1 ORF(8) - -   123001-131000 124764-125252 Vbeta6.10 X61444 [4] V7-1[L36092/U66059][11]
TRBV7-2 F + +   166001-170000 167212-167708 Vbeta6.7a X61442 [4] V6S7[U07976][14], V6S7[U07978][14], V7-2[L36092/U66059][11]
F + +       Vbeta6.7b X61443 [4] V7-2[L36190][11], V6S7[AF009660][41]
F + +       V6S7 U07975 [14]  
(F) + +       Vbeta6.6 M27387 [29]#c  
TRBV7-3 F + + + 197001-200000 199093-199549 Vbeta6.1 X61440 [4] BV6S1[L33104][15], V7-3[L36092/U66059][11], Tcrb-V6.1A[M67511][44](26)°,
Tcrb-V6.1B[M67512][44](27)°
ORF(15) + +       Vbeta6.1 M97943 [5] BV6S1[L33103][15]
ORF(15) + +       BV6S1 L33105 [15] V6S1[AF009660][41]
(F) + +       Vbeta6.1 X74843 [28]#c  
(F) + +         M13550 [30]#c  
TRBV7-4 F - -   268001-274000 269879-270340 V7-4 L36092/U66060 [11] V6S11[AF009662][41], [AF009663][41], Vbeta6.11c[L14432][31](17)°,
Vbeta6.11d[L14459][31](18)°
[P](10)           Vbeta6.11a L13762 [31]° Vbeta6.11b[L14431] (7) [31]°
TRBV7-5 P(10) - -   286501-292250 288811-289282 V7-5 L36092/U66060 [11] V6S12[AF009662][41], Vbeta6.12b[L14475][31](18)°, Vbeta6.12a[M97503][31](28)°
P(10) - -         AF009663 [41]  
TRBV7-6 F + +   304501-311000 306894-307386 V7-6 L36092/U66060 [11] [AF009663][41], Vbeta6.13b[L14480][31](17)°, Vbeta6.13a[M97504][31](29)°
(F) + +       Vbeta6 X58806 [23]#c  
TRBV7-7 F + +   324501-330000 326337-326838 V7-7 L36092/U66060 [11] [AF009663][41], Vbeta6.14b[L14483][31](19)°, Vbeta6.14b[M97505][31](30)°
(F) + +       Vbeta6.7 X57607 [24]#c  
TRBV7-8 F + +   344501-350000 346720-347203 Vbeta.ATL12-2 M11953 [3] V7-8[L36092/U66060][11], [AF009663][41]
F + +       Vbeta6.3 X61441 [4]  
(F) + +       Vbeta6.3 M27384 [29]#c  
TRBV7-9 F + +   360001-367500 364137-364609 V7-9 L36092/U66060 [11] [AF009661][41], BV6S4[U03115][8], Vbeta6.9[X64741][40](32)°
(F) + +         M15564 [39]#c  
F + +         AF009663 [41]  
(F) + +       ph22 M14261 [10]#c  
(F) + +       Vbeta6.5 M27385 [29]#c  
(F) + +       Vbeta6.5 X74844 [28]#c  
(F) + +         L14854 [33]#c  
8 TRBV8-1 P(9) - -   170001-180000 (9)-173604 V8-1 L36092/U66059 [11] [AF009660][41]
TRBV8-2 P(10) - -   200001-202000 200895-201355 V8-2 L36092/U66059 [11] [AF009660][41]
9 TRBV9 F + + + 205501-210000 206647-207121 V9 L36092/U66059 [11]  
F + +         AF009660 [41]  
(F) + +       Vbeta1.1 M27380 [29]#c  
10 TRBV10-1 F + +   210001-219000 214638-215087 BV12S4 U17050 [16] V10-1[L36092/U66059][11], BV12S4[L26230][12](19)°
F + +         AF009660 [41]  
[P](11) +         BV12S4 U17051 [16]°  
TRBV10-2 F + +   234001-244000 239704-240153 BV12S3 U17049 [16] V10-2[L36092/U66059][11]
[F] +         BV12S3 U17048 [16]°  
TRBV10-3 F + + + 375001-384500 379068-379517 BV12S2 U03115 [8] V10-3[L36092/U66060][11], [AF009661][41],[AF009663][41],
Vbeta12.2[L33100][35](23)°
F + + +     BV12S2 U17047 [16]  
[F] +         Vbeta12.2 L33101 [35]°  
[F] +         Vbeta12.2 L33102 [35]°  
11 TRBV11-1 F + +   219001-226000 222397-222844 V21.1 M33233 [13] V11-1[L36092/U66059][11]
TRBV11-2 F + + + 244001-255200 248664-249102 V11-2 L36092/U66059 [11]  
[F] +         V21.3 M33235 [13]°  
(F) + +       Vbetaw21 X58796 [23]#c  
TRBV11-3 F + +   384501-393000 389716-390153 V21.2 U03115 [8](35) BV21S2, V11-3[L36092/U66060][11], [AF009661][41],
[AF009663][41]
(F) + +       Vbetaw21 X58797 [23]#c  
(F) + +       Vbeta21 M62377 [19]#c  
(F) + +       Vbeta21.4a [40]#  
12 TRBV12-1 P(11) - -   226001-234000 229930-230372 v-beta8.4 X07224 [7] V12-1[L36092/U66059][11]
TRBV12-2 P(11) + -   255201-260000 255591-256033 V-beta8.5 X06936 [7] V12-2[L36092/U66059][11], [AF009663] [41]
TRBV12-3 F + + + 393001-397000 395318-395764 v-beta8.1 X07192 [7] BV8S1[U03115][8], V12-3[L36092/U66060][11], [AF009661][41]
TRBV12-4 F + + + 397001-405000 398641-399087 VbetaM3-2 K02546 [6] v-beta8.2[X07222][7], BV8S2[U03115][8], V12-4[L36092/U66060][11]
(F) + +       ph8 M14264 [10]#c  
TRBV12-5 F - +   405001-419000 415832-416278 v-beta8.3 X07223 [7] BV8S3[U03115][8], V12-5[L36092/U66060][11]
13 TRBV13 F + +   367501-375000 370656-371139 BV23S1 U03115 [8] V13[L36092/U66060][11], [AF009661][41], [AF009663][41],
Vbeta23[U96844][46](31)
(F) + +       Vbeta22 M62378 [19]#c  
14 TRBV14 F + + + 419001-423500 422775-423207 Vbeta16 X06154 [9] BV16S1[U03115][8], V14[L36092/U66060][11]
(F) + +       Vbeta16b X57722 [24]#g  
15 TRBV15 F + +   423501-430000 427850-428318 BV24S1 U03115 [8] V15[L36092/U66060][11]
(F) + +       Vbetaw24 X58800 [23]#c  
(F) + +       Vbeta24 M62376 [19]#c  
16 TRBV16 F + +       BV25S1 L26231 [12]  
P(11) - +   430001-435000 432859-433312 BV25S1 U03115 [8] V16[L36092/U66060][11]
(F) + +         L26054 [36]#c  
17 TRBV17 ORF(13) - -   435001-445000 436475-437209 BV26S1 U03115 [8] V17[L36092/U66060][11]
18 TRBV18 F + + + 445001-452700 450546-451164 V18 L36092/U66060 [11]  
19 TRBV19 F + + + 452701-458000 453806-454281 V19 L36092/U66060/U66061][11]  
F + +       BV17S1 U48259 [17] BV17S1[U48260][17]
(F) + +       Vbeta17.1 M97725 [37]#c  
20 TRBV20-1 F + + + 458001-467000 461476-462148 Vbeta.MT1-1 M11955 [3] V20-1[L36092/U66060/U66061][11]
F + +       BV2S1 X72719 [2]  
(F) + +       Vbeta.MT1-1 M11954 [3]#g  
(F) + +       ph34 M14263 [10]#c  
(F) + +       Vbeta2.1b X57604 [24]#g  
(F) + +       Vbeta2.3a D13088 [32]#c  
(F) + +       Vbeta2.1 X74852  [28]#c  
21 TRBV21-1  P(12) + +   467001-474000 471659-472119 V21-1 L36092/U66060/U66061 [11] BV10[L27608][18], V10S1[L48728][42]
22 TRBV22-1 P(10) - -   474001-478500 476480-476930 V22 L36092/U66061 [11]  
23 TRBV23-1 ORF(4) + +   478501-485000 480699-481195 V23 L36092/U66061 [11] [L48730][42], BV19[L27614][18](21)°
24 TRBV24-1 F + +   485001-497500 490040-490516 Vbeta.ATL2-1 M11951 [3] BV15[L27612][18], V24-1[L36092/U66061][11]
25 TRBV25-1 F + + + 497501-510000 504415-504882 V25-1 L36092/U66061 [11] BV11[L27610][18]
26 TRBV26 P(14) - -   522001-537500 529336-529820 V26 L36092/U66061 [11]  
27 TRBV27 F + + + 547201-552000 549038-549510 V27 L36092/U66061 [11]  
28 TRBV28 F + + + 552001-565000 554328-554808 V3S1 U08314 [45] V28[L36092/U66061][11], Vbeta2[M18464][43](24)°
29 TRBV29-1 F + +   565001-579000 573946-574559 V29-1 L36092/U66061 [11] VB4[L27623][18](22)°
(F) + +       Vbeta4 M13847 [22]#c  
(F) + +       Vbeta4.3 X04926 [38]#c  
30 TRBV30 (34) F + + + 659001-684973 667298-666920 V30 L36092/U66061 [11]  
F + + +     Vbeta18 Z13967 [1]  
P(16)           Vbeta18 [1]  
(F) + +         M13554 [30]#c  
(F) + +       Vbeta20.n1 L06893 [21]#c  
A TRBVA P(10) - -   510001-522000 515043-515497   L36092 [11]  
B TRBVB P(11) - -   537501-547200 545032-545572   L36092 [11]  
# Rearranged, #c: rearranged cDNA, #g: rearranged genomic DNA.
° DNA genomic sequence, but not known as being germline or rearranged.

TRBV genes are designated by a number for the subgroup [11] followed, whenever there are several genes belonging to the same subgroup, by a dash and a number for their relative localisation in the locus.
Orphons have been described for each of the following subgroups: TRBV 20, 21, 23, 24, 25 and 29, the single member gene in the main locus is designated by the subgroup number followed by a dash and the number 1. To date, no orphon has been reported which belongs to subgroup 22, therefore the IMGT designation of the single member gene is TRBV22.

 IMGT notes:
(1)
 STOP-CODON in L-PART1; 1st-CYS replaced by Arg in V-EXON.
(2)
 1st_CYS replaced by STOP-CODON in V-EXON.
(3)
 Frameshift in V-EXON; V-HEPTAMER violates consensus.
(4)
 GT replaced by AT in DONOR-SPLICE.
(5)
 CONSERVED-TRP replaced by Ser in V-EXON.
(6)
 CONSERVED-TRP replaced by Arg in V-EXON.
(7)
L14431 differs from TRBV7-4*01 by the nucleotide DELETION (c255>del) and (t266>del) which create a frameshift.
(8)
 1st_CYS replaced by Tyr in V-EXON; missing V-SPACER and V-NONAMER.
(9)
 Frameshift in V-EXON, L-PART1 is missing.
(10)
 Frameshift in V-EXON.
Although it is not excluded that the sequence 172780-172829 in L66059, L36092 may represent a very degenerate leader peptide, it was not labeled as L-PART1 for the following reasons (i) the translated sequence is not particularly hydrophobic (ii) the sequence shows no similarity with the other TRBV L-PART1, included the one from TRBV8-2, also a pseudogene but with a clearly identified L-PART1 (iii) the DONOR-SPLICE displays a codon-start 2 instead of being a codon-start 3 (note by M.-P. Lefranc, added on 07/04/2004, following a question by V. Herle).
(11)
 One amino acid replaced by STOP-CODON in V-EXON.
(12)
 Frameshift in L-PART1.
(13)
 2nd-CYS replaced by Tyr in V-EXON.
(14)
 STOP-CODON in L-PART1; 2nd_CYS replaced by Tyr in V-EXON.
(15)
 2nd_CYS replaced by Arg in V-EXON.
(16)
 Arg replaced by STOP-CODON in V-EXON.
(17)
 V-GENE is partial: partial L-PART1, no V-HEPTAMER, no V-NONAMER and V-REGION is partial: AA 100 to 108 are absent (partial FR3-IMGT and no CDR3-IMGT).
(18)
 V-GENE is partial: partial L-PART1, no V-HEPTAMER, no V-NONAMER and V-REGION is partial: AA 21 to 108 are absent (partial FR1-IMGT, no CDR1-IMGT, no FR2-IMGT, no CDR2-IMGT, no FR3-IMGT, no CDR3-IMGT).
(19)
 V-GENE is partial: no L-PART1, no V-HEPTAMER, no V-NONAMER and V-REGION is partial: AA 100 to 108 are absent (partial FR3-IMGT and no CDR3-IMGT).
(20)
 V-GENE is partial: no L-PART1, no V-HEPTAMER, no V-NONAMER and V-REGION is partial: AA 92 to 108 are absent (partial FR3-IMGT and no CDR3-IMGT).
(21)
 V-GENE is partial: no L-PART1, no V-HEPTAMER, no V-NONAMER and V-REGION is partial: AA 90 to 108 are absent (partial FR3-IMGT and no CDR3-IMGT).
(22)
 V-GENE is partial: no L-PART1, no V-HEPTAMER, no V-NONAMER and V-REGION is partial: AA 99 to 108 are absent (partial FR3-IMGT and no CDR3-IMGT).
(23)
 V-REGION is partial: AA 105 to 108 are absent (no CDR3-IMGT).
(24)
 V-GENE is partial: no V-HEPTAMER, no V-NONAMER and V-REGION is partial: AA 9 to 108 are absent (partial FR1-IMGT, no CDR1-IMGT, no FR2-IMGT, no CDR2-IMGT, no FR3-IMGT, no CDR3-IMGT).
(25)
 V-J-GENE is partial: partial L-PART1, no J-REGION.
(26)
 V-REGION is partial: AA 1 to 24 and 106 to 108 are absent (partial FR1-IMGT, partial CDR3-IMGT). AA position 55, 83 are missing, probably typing errors.
(27)
 V-REGION is partial: AA 1 to 24 and 106 to 108 are absent (partial FR1-IMGT, no CDR1-IMGT, no FR2-IMGT, no CDR2-IMGT, no FR3-IMGT, partial CDR3-IMGT). G position 47 is missing, ACT position 70 to 72 are missing, A position 110 inserted, GGA position 139 to 141 are missing and A position 73 replaced by G, probably typing errors.
(28)
 V-GENE is partial: partial L-PART1, no V-HEPTAMER, no V-NONAMER and V-REGION is partial: AA 100 to 108 are absent (partial FR3-IMGT and no CDR3-IMGT).
(29)
 V-GENE is partial: partial L-PART1, no V-HEPTAMER, no V-NONAMER and V-REGION is partial: AA 25 to 108 are absent (partial FR1-IMGT, no CDR1-IMGT, no FR2-IMGT, no CDR2-IMGT, no FR3-IMGT, no CDR3-IMGT).
(30)
 V-GENE is partial: Partial L-PART1, no V-HEPTAMER, no V-NONAMER and V-REGION is partial: AA 24 to 108 are absent (partial FR1-IMGT, no CDR1-IMGT, no FR2-IMGT, no CDR2-IMGT, no FR3-IMGT, no CDR3-IMGT).
(31)
 V-GENE is partial: no V-NONAMER.
(32)
 V-REGION is partial: AA 1 to 3 and 76 to 108 are absent (partial FR1-IMGT, partial FR3-IMGT, no CDR3-IMGT).
(33)
 V-GENE is partial: no V-HEPTAMER, no V-NONAMER and V-REGION is partial: AA 93 to 108 are absent (partial FR3-IMGT and no CDR3-IMGT).
(34)
 In the human TRB locus, the TRBV30 gene is localized in 3' from the TRBC2 gene and is in inverted orientation of transcription. Due to its polarity opposite to the TRB D-J-C-CLUSTERs, TRBV30 rearranges by an inversional joining [11].
This gene was previously entered in the databases as V21.2, M33234 [13], but has been shown to contain several nucleotide errors.
(a)
 Arbitrary limits of the DNA sequence assigned to the different TRBV genes. 
(b)
 Limits from INIT-CODON (ATG) to the last nucleotide of V-REGION.

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Created: 07/10/1996
Last updated: Friday, 11-Jun-2010 18:50:05 CEST
Author: Géraldine Folch
Contact: Marie-Paule Lefranc

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