Alignment of alleles: Spotted ratfish (Hydrolagus colliei)
IGHD (overview)
Only one sequence for each allele is shown. This set of sequences is
part of the IMGT reference directory.
Other known sequences are shown in the individual
Alignments of alleles.
Direct 5'- 3' orientation Inverted orientation
D T V G T H C I
I Q W P T V
Y S G P L Y
AF003840,IGHD1*01 GATACAGTGGGT ACCCACTGTATC
V Y M D V H V Y
Y T W S M Y
I H G P C I
AF003840,IGHD2*01 GTATACATGGAC GTCCATGTATAC
G Y N V Y S V Y T G V L I N E Y S S V H T V Y I V P
G T M Y T V C T L E Y S M S T P V Y T L Y T L Y
V Q C I Q C V H W S T H * V L Q C T H C I H C T
AF003946,IGHD3*01 ~VDJ GGGTACAATGTATACAGTGTGTACACTGGAGTACTCATT AATGAGTACTCCAGTGTACACACTGTATACATTGTACCC
E I L T T G W D I P P R S * N L
R F * L R G G S H P V V R I
D S N Y G V G P T P * L E S
AF003839,IGHD4*01 #c GAGATTCTAACTACGGGGTGGGAT ATCCCACCCCGTAGTTAGAATCTC
G Y N V Y S V Y T G V L I N E Y S S V H T V Y I V P
G T M Y T V C T L E Y S M S T P V Y T L Y T L Y
V Q C I Q C V H W S T H * V L Q C T H C I H C T
AF004359,IGHD5*01 #c GGGTACAATGTATACAGTGTGTACACTGGAGTACTCATT AATGAGTACTCCAGTGTACACACTGTATACATTGTACCC
G Y N V Y S V Y T G V L N I E Y S S V H T V Y I V P
G T M Y T V C T L E Y S L S T P V Y T L Y T L Y
V Q C I Q C V H W S T Q * V L Q C T H C I H C T
AF004360,IGHD6*01 #c GGGTACAATGTATACAGTGTGTACACTGGAGTACTCAAT ATTGAGTACTCCAGTGTACACACTGTATACATTGTACCC
A R Q W I R I D I Y T Y P L S G
P D S G Y V * S I R I H C R
P T V D T Y R L Y V S T V G
AF003853,IGHD7*01 #c GCCCGACAGTGGATACGTATAGAT ATCTATACGTATCCACTGTCGGGC
L F E A G L P A S N
C L R R E F P P Q T
V * G G K S R L K Q
AF003841,IGHD8*01 CTGTTTGAGGCGGGAAG CTTCCCGCCTCAAACAG
Y T G S P V
I R G A P Y
Y G A P R I
AF003841,IGHD9*01 TATACGGGGCT AGCCCCGTATA
D R D T V G S R R G S R P P P A T H C V P I
I G T Q W V A G G G D P L R L P T V S R
S G H S G * P E G V T P S G Y P L C P D
AF003854,IGHD10*01 #c GATCGGGACACAGTGGGTAGCCGGAGGGGGTCG CGACCCCCTCCGGCTACCCACTGTGTCCCGATC
A D R G G Q L S T P I R
R I G V D C P P R S
G S G W T V H P D P
AF003855,IGHD11*01 #c GCGGATCGGGGTGGACAA TTGTCCACCCCGATCCGC
Y T V G T R S G T H C I
I Q W V P R V P T V
Y S G Y P G Y P L Y
AF003856,IGHD12*01 #c TATACAGTGGGTACCCGA TCGGGTACCCACTGTATA
E S G Y R E L R I N P * F S V P T L
R V G T E N Y G I R S S R Y P L
E W V P R T T D S V V L G T H S
AF003857,IGHD13*01 #c GAGAGTGGGTACCGAGAACTACGGATT AATCCGTAGTTCTCGGTACCCACTCTC
D H S R G N P N V W V P P T V V
T T V G G T Q F G F P L L W
P Q * G E P K L G S P Y C G
AF003858,IGHD14*01 #c GACCACAGTAGGGGGAACCCAAAC GTTTGGGTTCCCCCTACTGTGGTC
G P H T V D F G S E I D C V G A
A P T Q S I S P K S T V W G
P P H S R F R R N R L C G G
AF003859,IGHD15*01 #c GGCCCCCACACAGTCGATTTCGGA TCCGAAATCGACTGTGTGGGGGCC
L I D Q
* I
D S
AF003860,IGHD16*01 #c TTGATC GATCAA
D P G S D V G P R I
I L G P S D P G
S W V R R T Q D
AF003861,IGHD17*01 #c GATCCTGGGTCCGAC GTCGGACCCAGGATC
#c: rearranged cDNA
~VDJ:VDJ genomic DNA rearranged in the cassette.
Created: Monday, 11-Jul-2011 12:57:02 CEST
Author: Dominique Scaviner
Contact: Marie-Paule Lefranc
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics
information system® http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text;
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37:
D1006-D1012; doi:10.1093/nar/gkn838
Full text.