IMGT Repertoire (IG and TR)
Alignment of alleles: Rabbit (Oryctolagus cuniculus) IGKV1S3
When several alleles are shown, the nucleotide mutations and amino acid
changes for a given codon are indicated in red letters. These polymorphic mutations are reported in
Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the
IMGT unique numbering.
Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
A Q V L T Q T P A S V S A A V G G T V T
X02337 IGKV1S3*01 F gcc caa gtg ctg acc cag act cca gcc tcc gtg tct gca gct gtg gga ggc aca gtc acc
M
K02439 IGKV1S3*02 F --- --- --- a-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
___________________CDR1-IMGT____________________
21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40
I N C Q A S E S I S S Y L N
X02337 IGKV1S3*01 F atc aat tgc cag gcc agt gag agc att ... ... ... ... ... ... agt agc tac tta aac
I
K02439 IGKV1S3*02 F --- -tc --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- ---
_______________CDR2-
41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
W Y Q Q K L G Q P P K L L I Y Y A
X02337 IGKV1S3*01 F tgg tat cag cag aaa cta ggg cag cct ccc aaa ctc ctg atc tat tat gca ... ... ...
K02439 IGKV1S3*02 F --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... ...
IMGT________________
61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80
S T L A S G V P S R F K G S G
X02337 IGKV1S3*01 F ... ... ... ... tcc act ctg gca tct ggg gtc cca ... tcg cgg ttc aaa ggc agt gga
K02439 IGKV1S3*02 F ... ... ... ... --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- ---
81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
S G T E Y T L T I S G V Q C D D A A
X02337 IGKV1S3*01 F ... ... tct ggg aca gag tac act ctt acc atc agc ggt gtg cag tgt gac gat gct gcc
K02439 IGKV1S3*02 F ... ... --- --- --- --- --- --- --- --- --- --- --c --- --- --- --- --- --- ---
_______________CDR3-IMGT__________________
101 102 103 104 105 106 107 108 109 110 111 112 113 114
T Y Y C Q H G Y I Y S S G D
X02337 IGKV1S3*01 F act tac tac tgt cag cat ggt tat att tat agt agt ggt gat ac
K02439 IGKV1S3*02 F --- --- --- --- --- --- --- --- --- --- --- --- --- --- --
Author: Fatena Bellahcene
Editor: Chantal Ginestoux
Contact: Marie-Paule Lefranc
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics
information system® http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text;
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37:
D1006-D1012; doi:10.1093/nar/gkn838
Full text.
For any other use please contact Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr.
IMGT founder and director: Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr
Bioinformatics manager: Véronique Giudicelli
Veronique.Giudicelli@igh.cnrs.fr
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Patrice.Duroux@igh.cnrs.fr
Webmaster: Chantal Ginestoux
Chantal.Ginestoux@igh.cnrs.fr
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