IMGT Repertoire (IG and TR)

Alignment of alleles: Rabbit (Oryctolagus cuniculus) IGKV1S39

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).


                                       
                                       
                                        1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                        D   V   V   M   T   Q   T   P   S   P   V   S   A   A   V   G   G   T   V   T 
  AF135613 IGKV1S39*01 [F] (1)         gat gtc gtg atg acc cag act cca tcc ccc gtg tct gca gct gtg gga ggc aca gtc acc


                                                               ___________________CDR1-IMGT____________________        
                                       
                                        21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40 
                                        I   N   C   Q   A   S   Q   S   I                           G   S   D   L   S 
  AF135613 IGKV1S39*01 [F] (1)         atc aat tgc cag gcc agt cag agc att ... ... ... ... ... ... ggt agc gac tta tcc


                                                                                                   _______________CDR2-
                                       
                                        41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                        W   Y   Q   Q   K   P   G   Q   P   P   K   L   L   I   Y   S   A             
  AF135613 IGKV1S39*01 [F] (1)         tgg tat cag cag aaa cca ggg cag cct ccc aag ctc ctg atc tat tct gca ... ... ...


                                       IMGT________________                                                            
                                       
                                        61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80 
                                                        S   K   L   A   T   G   V   P       S   R   F   S   G   S   G 
  AF135613 IGKV1S39*01 [F] (1)         ... ... ... ... tcc aaa ctg gca act ggg gtc cca ... tcg cgg ttc agc ggc agt gga


                                       
                                       
                                        81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100 
                                                S   G   T   Q   F   T   L   T   I   S   G   V   Q   C   D   D   A   A 
  AF135613 IGKV1S39*01 [F] (1)         ... ... tct ggg aca cag ttt act ctc acc atc agc ggc gtg cag tgt gac gat gct gcc


                                                       _____________CDR3-IMGT______________
                                       
                                       101 102 103 104 105 106 107 108 109 110 111 112 113 
                                        T   Y   Y   C   Q   G   S   Y   S   G   A   T   Y  
  AF135613 IGKV1S39*01 [F] (1)         act tac tac tgt caa ggc agt tat agt ggt gct act tac   °

Legend:

°: genomic DNA, but not known as being germline or rearranged.

IMGT note:
(1)	V-REGION is partial: partial CDR3-IMGT.

Created: 04/05/2010
Author: Fatena Bellahcene
Editor: Chantal Ginestoux
Contact: Marie-Paule Lefranc

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