IMGT Repertoire (IG and TR)

Alignment of alleles: Rabbit (Oryctolagus cuniculus) IGKV1S5

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

 
                                    
                                    
                                     1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                     D   P   V   M   T   Q   T   P   S   S   T   S   A   A   V   G   G   T   V   T 
  X00977   IGKV1S5*01 F             gac cct gtg atg acc cag act cca tct tcc acg tct gcg gct gtg gga ggc aca gtc acc


                                                            ___________________CDR1-IMGT____________________        
                                    
                                     21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40 
                                     I   N   C   Q   S   S   Q   N   V   Y                   S   N   N   Y   L   S 
  X00977   IGKV1S5*01 F             atc aac tgc cag tcc agt cag aat gtt tat ... ... ... ... agt aac aac tac tta tcc


                                                                                                _______________CDR2-
                                    
                                     41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                     W   F   Q   Q   K   P   G   Q   P   P   K   L   L   I   Y   G   A             
  X00977   IGKV1S5*01 F             tgg ttt cag cag aaa cca ggg cag cct ccc aag ctc ctg atc tat ggt gca ... ... ...


                                    IMGT________________                                                            
                                    
                                     61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80 
                                                     S   K   L   A   S   G   V   P       S   R   F   S   G   S   G 
  X00977   IGKV1S5*01 F             ... ... ... ... tcc aaa ctg gca tct ggg gtc cca ... tcg cgg ttc agc ggc agt gga


                                    
                                    
                                     81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100 
                                             S   G   K   Q   F   T   L   T   I   S   G   V   Q   C   D   D   A   A 
  X00977   IGKV1S5*01 F             ... ... tct ggg aaa cag ttc act ctc acc atc agt ggc gtg cag tgt gac gat gct gcc


                                                    _________________CDR3-IMGT____________________    
                                    
                                    101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 
                                     T   Y   Y   C   A   G   Y   Y   Y   S   G   S   G   T   D  
  X00977   IGKV1S5*01 F             act tac tac tgt gca ggg tat tat tat agt ggt agt ggc act gat ac

Created: 04/05/2010
Author: Fatena Bellahcene
Editor: Chantal Ginestoux
Contact: Marie-Paule Lefranc

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Research, 27, 209-212 (1999) Cover of NAR; Ruiz, M. et al., Nucleic Acids Research, 28, 219-221 (2000); Lefranc, M.-P., Nucleic Acids Research, 29, 207-209 (2001); Lefranc, M.-P., Nucleic Acids Res., 31, 307-310 (2003); Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5, 45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33, D593-D597 (2005) Full text; Lefranc, M.-P. et al., Nucleic Acids Research 2009 37: D1006-D1012; doi:10.1093/nar/gkn838 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

IMGT founder and director: Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr
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Computer manager: Patrice Duroux Patrice.Duroux@igh.cnrs.fr
Webmaster: Chantal Ginestoux Chantal.Ginestoux@igh.cnrs.fr

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