IMGT Repertoire (IG and TR)

Alignment of alleles: Rabbit (Oryctolagus cuniculus) IGKV1S6

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                    
                               
  
                               
                                     1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                     D   G   V   M   T   Q   T   P   A   P   V   S   A   A   V   G   G   T   V   T 
  X14364   IGKV1S6*01 F             gat ggc gtg atg acc cag act cca gcc ccc gtg tct gca gct gtg gga ggc aca gtc acc


                                                            ___________________CDR1-IMGT____________________        
                                    
                                     21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40 
                                     I   N   C   Q   A   S   Q   S   I                           G   S   D   L   S 
  X14364   IGKV1S6*01 F             atc aat tgc cag gcc agt cag agc att ... ... ... ... ... ... ggt agc gac tta tcc


                                                                                                _______________CDR2-
                                    
                                     41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                     W   Y   Q   Q   K   P   G   Q   P   P   K   L   L   I   Y   S   A             
  X14364   IGKV1S6*01 F             tgg tat cag cag aaa cca ggg cag cct ccc aag ctc ctg atc tat tct gca ... ... ...


                                    IMGT________________                                                            
                                    
                                     61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80 
                                                     S   K   L   A   T   G   V   P       S   R   F   N   G   S   G 
  X14364   IGKV1S6*01 F             ... ... ... ... tcc aaa ctg gca act ggg gtc cca ... tcg cgg ttc aac ggc agt gga


                                    
                                    
                                     81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100 
                                             S   G   T   Q   F   T   L   T   I   S   G   V   Q   C   D   D   A   A 
  X14364   IGKV1S6*01 F             ... ... tct ggg aca cag ttt act ctc acc atc agc ggc gtg cag tgt gac gat gct gcc


                                                    _____________CDR3-IMGT________________    
                                    
                                    101 102 103 104 105 106 107 108 109 110 111 112 113 
                                     T   Y   Y   C   Q   C   T   Y   S   S   S   T   G  
  X14364   IGKV1S6*01 F             act tac tac tgt caa tgc act tat agt agt agt act ggt tc

Created: 04/05/2010
Author: Fatena Bellahcene
Editor: Chantal Ginestoux
Contact: Marie-Paule Lefranc

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Research, 27, 209-212 (1999) Cover of NAR; Ruiz, M. et al., Nucleic Acids Research, 28, 219-221 (2000); Lefranc, M.-P., Nucleic Acids Research, 29, 207-209 (2001); Lefranc, M.-P., Nucleic Acids Res., 31, 307-310 (2003); Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5, 45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33, D593-D597 (2005) Full text; Lefranc, M.-P. et al., Nucleic Acids Research 2009 37: D1006-D1012; doi:10.1093/nar/gkn838 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

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