IMGT Repertoire (IG and TR)
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2. Proteins and alleles
Protein displays
- Headers:
- 'IMGT Protein display for V domain'
-
'IMGT Protein display for C domain'
-
'IMGT Protein display for G domain'
Leader sequence logos of the IG and TR V genes: Human, Mouse
V-REGION sequence logos of the IG and TR: Human, Mouse
V-REGION
- IGHV
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), Arabian camel (Camelus dromedarius), llama (Lama glama), (Cricetinae gen. sp.), pig (Sus scrofa), domestic sheep (Ovis aries), Norway rat (Rattus norvegicus), European rabbit (Oryctolagus cuniculus)
- Sauropsida: common caiman (Caiman crocodilus)
- Amphibia: African clawed frog (Xenopus laevis)
- Teleostei: Japanese flounder (Paralichthys olivaceus), channel catfish (Ictalurus punctatus), Arctic char (Salvelinus alpinus), Atlantic cod (Gadus morhua), emerald rockcod (Pseudotrematomus bernacchii), goldfish (Carassius auratus), (Chaenocephalus aceratus), ladyfish (Elops saurus), Atlantic salmon (Salmo salar), tiger puffer (Takifugu rubripes), rainbow trout (Oncorhynchus mykiss), black rockcod (Notothenia coriiceps), leopard danio (Danio rerio), spotted wolffish (Anarhichas minor)
- Chondrichthyes: nurse shark (Ginglymostoma cirratum), bull shark (Carcharhinus leucas), clearnose skate (Raja eglanteria), horn shark (Heterodontus francisci), little skate (Leucoraja erinacea), Pacific ratfish (Hydrolagus colliei), sandbar shark (Carcharhinus plumbeus), spotted wobbegong (Orectolobus maculatus)
- Other: African lungfish (Protopterus aethiopicus)
- IGKV
- IGLV
- IGIV
- Teleostei: European sea bass (Dicentrarchus labrax), carp (Cyprinus carpio), channel catfish (Ictalurus punctatus), Atlantic cod (Gadus morhua), Atlantic salmon (Salmo salar), rainbow trout (Oncorhynchus mykiss), Japanese amberjack (Seriola quinqueradiata), leopard danio (Danio rerio), spotted wolffish (Anarhichas minor), Chautsi bass (Siniperca chuatsi)
- Chondrichthyes: horn shark (Heterodontus francisci), nurse shark (Ginglymostoma cirratum), Pacific ratfish (Hydrolagus colliei), sandbar shark (Carcharhinus plumbeus)
- TRAV
- TRBV
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), domestic goat (Capra hircus), Ma's night monkey (Aotus nancymaae), dog (Canis lupus familiaris), Norway rat (Rattus norvegicus), Rhesus monkey (Macaca mulatta)
- Amphibia: African clawed frog (Xenopus laevis)
- Teleostei: rainbow trout (Oncorhynchus mykiss)
- TRGV
- TRDV
The Protein displays below have been generated manually:
D-REGION
The Protein displays below have been generated manually:
- IGHD
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), pig (Sus scrofa), Norway rat (Rattus norvegicus), European rabbit (Oryctolagus cuniculus)
- Teleostei: Channel catfish (Ictalurus punctatus), Rainbow trout (Oncorhynchus mykiss), Zebrafish (Danio rerio)
- Chondrichthyes: bull shark (Carcharhinus leucas), sandbar shark (Carcharhinus plumbeus), nurse shark (Ginglymostoma cirratum), horn shark (Heterodontus francisci), Pacific ratfish (Hydrolagus colliei), Spotted wobbegong shark (Orectolobus maculatus), clearnose skate (Raja eglanteria), little skate (Leucoraja erinacea)
- TRBD
- TRDD
J-REGION
- IGHJ
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), llama (Lama glama), pig (Sus scrofa), domestic sheep (Ovis aries), Norway rat (Rattus norvegicus), European rabbit (Oryctolagus cuniculus)
- Teleostei: channel catfish (Ictalurus punctatus), ladyfish (Elops saurus), Atlantic salmon (Salmo salar), rainbow trout (Oncorhynchus mykiss), leopard danio (Danio rerio)
- Chondrichthyes: nurse shark (Ginglymostoma cirratum), bull shark (Carcharhinus leucas), clearnose skate (Raja eglanteria), horn shark (Heterodontus francisci), little skate (Leucoraja erinacea), Pacific ratfish (Hydrolagus colliei), sandbar shark (Carcharhinus plumbeus)
- IGKJ
- IGLJ
- IGIJ
- Teleostei: channel catfish (Ictalurus punctatus), Atlantic cod (Gadus morhua), Atlantic salmon (Salmo salar), rainbow trout (Oncorhynchus mykiss), leopard danio (Danio rerio), spotted wolffish (Anarhichas minor), Chautsi bass (Siniperca chuatsi)
- Chondrichthyes: horn shark (Heterodontus francisci), nurse shark (Ginglymostoma cirratum), Pacific ratfish (Hydrolagus colliei), sandbar shark (Carcharhinus plumbeus)
- TRAJ
- TRBJ
- TRGJ
- TRDJ
The Protein displays below have been generated manually:
- IGHJ
- Chondrichthyes: Spotted wobbegong shark (Orectolobus maculatus)
C-DOMAIN
The Protein displays below have been generated automatically. Be aware that the CH-S and M regions are not displayed.
- IGHC
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), Arabian camel (Camelus dromedarius), (Cricetinae gen. sp.), Domestic guinea pig (Cavia porcellus), black rat (Rattus rattus), bovine (Bos taurus), chimpanzee (Pan troglodytes), dog (Canis lupus familiaris), common gibbon (Hylobates lar), gorilla (Gorilla gorilla), domestic horse (Equus caballus), crab eating macaque (Macaca fascicularis), gray short-tailed opossum (Monodelphis domestica), Bornean orangutan (Pongo pygmaeus), pig (Sus scrofa), common brush-tailed possum (Trichosurus vulpecula), European rabbit (Oryctolagus cuniculus), Norway rat (Rattus norvegicus), domestic sheep (Ovis aries)
- Teleostei: Japanese flounder (Paralichthys olivaceus), brown trout (Salmo trutta), carp (Cyprinus carpio), channel catfish (Ictalurus punctatus), Arctic char (Salvelinus alpinus), Atlantic cod (Gadus morhua), emerald rockcod (Pseudotrematomus bernacchii), Atlantic halibut (Hippoglossus hippoglossus), (Chaenocephalus aceratus), ladyfish (Elops saurus), Atlantic salmon (Salmo salar), rainbow trout (Oncorhynchus mykiss), black rockcod (Notothenia coriiceps), leopard danio (Danio rerio), spotted wolffish (Anarhichas minor)
- Chondrichthyes: clearnose skate (Raja eglanteria), horn shark (Heterodontus francisci), little skate (Leucoraja erinacea), nurse shark (Ginglymostoma cirratum), Pacific ratfish (Hydrolagus colliei), sandbar shark (Carcharhinus plumbeus)
- Other: African lungfish (Protopterus aethiopicus)
- IGKC
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), Algerian mouse (Mus spretus), rock-loving mouse (Mus saxicola), Cook's mouse (Mus cookii), Gairdner's shrew-mouse (Mus pahari), Southern African pygmy mouse (Mus minutoides), Norway rat (Rattus norvegicus), European rabbit (Oryctolagus cuniculus)
- IGLC
- IGIC
- Teleostei: European sea bass (Dicentrarchus labrax), carp (Cyprinus carpio), channel catfish (Ictalurus punctatus), Atlantic cod (Gadus morhua), Atlantic salmon (Salmo salar), rainbow trout (Oncorhynchus mykiss), Japanese amberjack (Seriola quinqueradiata), leopard danio (Danio rerio), spotted wolffish (Anarhichas minor), Chautsi bass (Siniperca chuatsi), three spined stickleback (Gasterosteus aculeatus)
- TRAC
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), bovine (Bos taurus)
- Teleostei: tiger puffer (Takifugu rubripes)
- TRBC
- TRGC
- TRDC
C-DOMAIN with CH-S, M and HINGE regions
The Protein displays below have been obtained manually and display all the domains and regions including the CH-S and M regions.
- IGHC
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), domestic sheep (Ovis aries), bovine (Bos taurus), pig (Sus scrofa), gray short-tailed opossum (Monodelphis domestica), common brush-tailed possum (Trichosurus vulpecula), Arabian camel (Camelus dromedarius), domestic horse (Equus caballus), dog (Canis lupus familiaris), Norway rat (Rattus norvegicus), Chimpanzee (Pan troglodytes), Common gibbon (Hylobates lar), Gorilla (Gorilla gorilla), Bornean orangutan (Pongo pygmaeus), Macaques, European rabbit (Oryctolagus cuniculus)
- Teleostei
- Chondrichthyes: Horned shark (Heterodontus francisci), Spotted ratfish (Hydrolagus colliei), Spotted wobbegong shark (Orectolobus maculatus), Clearnose skate (Raja eglanteria), Little skate (Raja erinacea)
- Other: African lungfish (Protopterus aethiopicus)
-
TRAC
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), bovine (Bos taurus)
- Teleostei: tiger puffer (Takifugu rubripes)
- TRBC
- TRGC
- TRDC
Alignments of alleles
-
IGHV:
Human,
Chondrichthyes,
Teleostei,
Camel,
Llama,
Caiman,
Sheep,
Lungfish,
Frog,
Pig,
Rat,
Rabbit
IGHD: Human, Mouse, Teleostei, Chondrichthyes, Pig, Rat, Rabbit
IGHJ: Human, Mouse, Teleostei, Chondrichthyes, Llama, Sheep, Pig, Rat, Rabbit
IGHC: Human, Mouse, Sheep, Bos taurus, Pig, Opossum, Possum, Camel, Teleostei, Chondrichthyes, Horse, Dog, Rat, Primates, Lungfish, Rabbit - IGKV:
Human,
Mouse,
Possum,
Sheep,
Rabbit
IGKJ: Human, Mouse, Sheep, Rabbit
IGKC: Human, Mouse, Rabbit -
IGLV:
Human,
Mouse,
Possum
IGLJ: Human, Mouse
IGLC: Human, Mouse -
IGIV:
Teleostei,
Chondrichthyes
IGIJ: Teleostei, Chondrichthyes
IGIC: Teleostei
-
TRAV:
Human,
Mouse,
Teleostei,
Goat,
Primates
TRAJ: Human, Mouse, Primates, Pig , Teleostei, Bos taurus
TRAC: Human, Mouse, Teleostei, Bos taurus -
TRBV:
Human,
Mouse,
Goat,
Frog,
Primates,
Teleostei,
Dog
TRBD: Human, Mouse, Teleostei, Dog
TRBJ: Human, Mouse, Primates Teleostei, Dog
TRBC: Human, Mouse, Dog -
TRGV:
Human,
Mouse,
Bos taurus,
Dog
TRGJ: Human, Mouse, Bos taurus, Dog
TRGC: Human, Mouse, Sheep, Bos taurus, Dog -
TRDV:
Human,
Mouse,
Bos taurus
TRDD: Human, Mouse, Bos taurus
TRDJ: Human, Mouse, Pig, Bos taurus
TRDC: Human, Mouse, Bos taurus
Tables of alleles
-
IGHV:
Human,
Teleostei,
Camel,
Llama,
Caiman,
Sheep,
Lungfish,
Frog,
Pig
IGHD: Human, Mouse, Teleostei, Pig
IGHJ: Human, Mouse, Rabbit, Teleostei, Llama, Sheep, Pig
IGHC: Human, Rat, Primates, Lungfish -
IGKV:
Human,
Mouse,
Possum,
Sheep
IGKJ: Human, Mouse, Sheep
IGKC: Mouse -
IGLV:
Human,
Mouse,
Possum
IGLJ: Human, Mouse
IGLC: Human, Mouse -
IGIV:
Teleostei,
Chondrichthyes
IGIJ: Teleostei, Chondrichthyes
-
TRAV:
Human,
Mouse,
Teleostei,
Goat,
Primates
TRAJ: Human, Mouse, Primates, Pig , Teleostei
TRAC: Human, Mouse, Teleostei -
TRBV:
Human,
Mouse,
Goat,
Frog,
Primates,
Teleostei
TRBD: Human, Mouse
TRBJ: Human, Mouse, Primates
TRBC: Human, Mouse -
TRGV:
Human,
Mouse,
Bos Taurus
TRGJ: Human, Mouse Bos Taurus
TRGC: Human, Mouse -
TRDV:
Human,
Mouse
TRDD: Human, Mouse
TRDJ: Human, Mouse, Pig
TRDC: Human, Mouse
Allotypes
Isotypes
- IGLC: Human
Particularities in protein designations
- Immunoglobulin: Human
Created: 18/04/1997
Last updated: Thursday, 15-Dec-2011 22:01:55 CET
Editor: Chantal Ginestoux
Contact: Marie-Paule Lefranc
Last updated: Thursday, 15-Dec-2011 22:01:55 CET
Editor: Chantal Ginestoux
Contact: Marie-Paule Lefranc
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics
information system® http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text;
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37:
D1006-D1012; doi:10.1093/nar/gkn838
Full text.
For any other use please contact Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr.
IMGT founder and director: Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr
Bioinformatics manager: Véronique Giudicelli
Veronique.Giudicelli@igh.cnrs.fr
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