Protein display: Spotted ratfish (Hydrolagus colliei) IGH V-REGIONs

Only the *01 allele of each functional, ORF and in-frame pseudogene V-REGION is shown.

Dots indicate gaps according to the IMGT unique numbering. Blanks at the 5' and/or 3' end indicate partial sequences.

________________________________________________________________________________________________________________________________________________

      IGHV                        FR1-IMGT           CDR1-IMGT       FR2-IMGT      CDR2-IMGT                  FR3-IMGT                 CDR3-IMGT
      gene                         (1-26)             (27-38)        (39-55)        (56-65)                   (66-104)                 (105-115)
________________________ __________________________ ____________ _________________ __________ _______________________________________ ___________  
                         1       10        20         30         40        50         60         70        80        90        100       110

                         .........|.........|...... ...|........ .|.........|..... ....|..... ....|.........|.........|.........|.... .....|.....    

#c AF003853,IGHV1S1      AAVLTQPES.LTGKAGQSLRLTCRAS GLNIGRYT.... MFWYRQLPGKQRDQLLW HDSSSSK... RFAAGIE.NRVTVIREDSNNIFDLIIKSLRVEDTATYSC ARA
#c AF003839,IGHV1S2      AVVLTQPAT.LTGKPGTAVRLTCRTS GFNLGSYR.... MHWVRQVPGKGLEWLLH YYTSSSN... GYAPGIE.SRVTVIKEDSNNIFDLIIKSPTVHDTAIYYC ARE
   AF003841,IGHV1S3      DVVLTQPSS.LTGKPGQALRITCRTS GFDLSKYG.... MNWVWQVPGKWLEWLLY ISYTSASNS. RYTPDIQ.SRVTVNSNNSNNIIDLNIKSPTGHNTAISYC ASD
#c AF003854,IGHV1S6      AVVLTQPAT.LTGKPGTAVRLTCKTS GFTLSSTW.... MSWVRQVPGKGLEWLLY YYSSGSE... YYAPGIE.SRVTVRKDTSNNIFDLTINSPTVHDTAIYYC ARD
#c AF003855,IGHV1S7      AVVLTQPAT.LTGKPGTAVRLTCRTS GFNLGNYP.... MHWVRQVPGKGLEWLLH YYTSSSN... GYAPGIE.SRVTVIKEDSNNIFDLIIKSPTVHDTAIYYC ARA
#c AF003856,IGHV1S8      AVVLTQPAT.LTGKSGTAVRLTCKTS GFTLSSTW.... MSWVRQVPGKGLECLLY YYSSGSE... YYAPGIE.SRVTVRKDTSNNIFDLTINSPTVHDTAIYYC ARY
#c AF003857,IGHV1S9      AVVLTQPAT.LTGKPGTAVRLTCRTS GFTLSSYG.... MSWVRQVPGKGLEWLLY YYTSSSN... AYAPSIQ.SRVTVIRENSNNIFDLTINSPTVHDTAIYYC ARE
#c AF003858,IGHV1S10     AVVLTQPAT.LTGKPGTAVRLTRRTS GFTLSSYG.... MSWVRQVPGKGLEWLLY YYTSSTN... AYAPGIQ.SRVTVIRENSNNILDLTINSPTVHDTAIYYC VRD
#c AF003859,IGHV1S11     VAVLTQPAT.LTGKPGTAVRLTCKTS GFTLSSTW.... MSWVRQVPGKGLEWLLY YYSSGSE... YYAPGIE.SRVTVRKDTSNNIFDLTINSPTVHDTAIYYC ARG
#c AF003860,IGHV1S12     AVVLTQPAT.LTGKPGTAVRLACKTS GFTLSSYY.... MSWVRQVPGKGLEWLLH YHSSGSE... YYAPGIQ.SRVTVIKENSNNIFDLIIKSPTVHDTAIYYC ARL
#c AF003861,IGHV1S13     AVVLTQPAT.LTGKPGTAVRLTCKTS GFDLSSYS.... MHWVRQVPGKGLEWLLW YYSSSSN... AYAPGIQ.SRVTVIKENSNNIFDLIIKSPTVHDTAIYYC ARD
~VDJ  AF003946,IGHV1S14   DVVLTQPSS.LTGKPGQALRLTCTTS GFDLSNKF.... MFWVRRVPGKGLEWLLR YYRRSHSDN. LYAPGIR.NRVTVIKDYSDHICDLTINSLTVQDTAIYYC ARG


#c: rearranged cDNA
~VDJ: VDJ genomic DNA rearranged in the cassette.


Created: 06/07/2000
Last updated: Monday, 11-Jul-2011 12:57:02 CEST
Authors: Lorena Betancourt and Dominique Scaviner
Contact: Marie-Paule Lefranc

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