Protein display: Sandbar shark (Carcharhinus plumbeus) IGH V-REGIONs

Only the *01 allele of each functional, ORF and in-frame pseudogene V-REGION is shown.

Dots indicate gaps according to the IMGT unique numbering. Blanks at the 5' and/or 3' end indicate partial sequences.

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      IGHV                      FR1-IMGT           CDR1-IMGT       FR2-IMGT        CDR2-IMGT                  FR3-IMGT                 CDR3-IMGT
      gene                       (1-26)             (27-38)         (39-55)         (56-65)                   (66-104)                 (105-115)

________________________ __________________________ ____________  _________________ __________ ________________________________________ ___________  
                         1       10        20         30         40  44A   50       60      70 71A    80        90        100       110

                         .........|.........|...... ...|........ .|..........|..... ....|..... ....|..........|.........|.........|.... .....|.....    
#c U40560  ,IGHV1S1      DIVLTQPES.VVKKPGETVRLSCGVT GFDIDTHY.... ITWVKQ.VPGKGLEWLLY HDSRPQ.... EFAPGI.E.GRFTPSV..VSNTAYLEITSLSVTDTAIYYC AR
#c U50604  ,IGHV1S2      DIVLTQPES.VVKKPGETVRLSCAVS GFDIARVY.... ISWVKQ.GPGKGLEWLLY HDSRPQ.... GFAPGI.E.GRFSPSA..VSNTAYIEITSLRADDTAIYYC AR
#c U50605  ,IGHV1S3      DIVLTQPEG.VVKKPGETVRLSCAVS GFDIDSTY.... ISWVKQ.VPGKGLEWLLY HDSKPQ.... GFAPGI.E.GRLTPSV..VTNTAYIEITSLRVDDTATYYC AR
#c U50606  ,IGHV1S4      DIVLTQPES.VLKKPGETVRLSCAVS GFALDSTY.... MSWVKQ.DPGKGLEWLLY HDSSPQ.... GFAPGI.E.GRFTPSA..VSNTAYIEITNLRVDDTAIYYC AR
#c U50607  ,IGHV1S5      DIVLTQPES.VVKKSGETVRLSCAVR GFNIDSTF.... INWVKQ.VPGEGLEWLLY QDASPQ.... GFTPGI.E.GRFTPSV..VGSTAYIEITSLTTDDTAIYYC AR
#c U50608  ,IGHV1S6      DIVLTQPES.VVKKPGETVRLSCTVT GFEIDHTY.... ISWVKQ.VPGKGLEWLLN HDINPQ.... NFAPGI.E.GRFTPSV..ISNTAYLEITSLTTDDTAIYYC TR
#c U50609  ,IGHV1S7      DIVLTQPES.VVKKPGETVRLSCGIS GFDIDTHY.... ITWVKQ.VPGKGLEWLLY HDSRPQ.... EFAPGI.E.GRFTPSV..VSNTAYLEITRLSMPDTAIYYC AR
#c U50610  ,IGHV1S8      DIVLTQPES.VVNKPGETVRLSCGVS GFNIDTHY.... ISWVKQ.GPGKGLEWLLY HDSRSQ.... EFAPGI.E.GRFIPSV..VSNTAYLETARASAPDSAIYYC AR
#c AY548346 ,IGHV2S1  DVVLTQPDE.ETGHPEDSLKLTCSTS GFKLANYW.... MGWIRQ.VPGQGLEWLVS YYSTESNYY. VPSIQG.R.FTASKDT..SNNMFSLHMTTLKTEDTAIYYC AR
#c AY548347 ,IGHV2S2     DVVLTQPDE.ETGRPGRSLKLTCKTS AFRLRRAST... MSWIRQAVPGQGLVWLVS FYSSSYEYY. APGIQG.R.FTASKDT..SNNIFSLNMRTLKIEDTAIYYC AR
#c AY548348 ,IGHV2S3  DVVLTQPDE.ETGHPGDSLKLTCSTS GFKLANYW.... MGWIRQ.VPGQGLEWLVS YYSTESNYY. EPSIQG.R.FTTSKDT..SNNMFSLHMTTLKTEDTAIYYC AR
#c AY548349 ,IGHV2S4(1) DIVLTQPEA.ETGHPGGSLKLTCKTS GFDLSGKY.... MSWIRQ.VPGQGLEWLVS YRSKSNEYY. APGIQG.R.FTASKEI..SNNIFSLDMRTLKIEDTAIYYC VR
#c AY548350 ,IGHV2S5     DVVLTQ.....TGRPGGSLKLTCKTS GFDLNNDW.... MGWIRQ.VPGQGLEWLVS YHHSASSNY. APSIQG.R.YTASKDT..INNIFSLDMTNLKIEDTATYFC AR
#c AY548351 ,IGHV2S6 DVVLTQNEA.ETGRPGGSLKLTCKTS GFSLSGYW.... MFWIRQ.VPGQGLEWLVS CATSSNSNY. APSIQGSR.FHASKDT..TNNIFSLDMRSLTIEDSAIYYC AR
#c AY548352 ,IGHV2S7  GIRLTQPEA.ETGHPGGSLKLTCKTS GFNLGSYF.... ICWIRQ.VPGQGLEFLTS YLNSDNNYY. VPSIQG.R.FTASKDT..SNNIFSLDEDALTLEDTAIYYC AR
#c AY548353 ,IGHV2S8   DVVLTQPDE.ETGRPGGSLKLTCKTS GFDLSNYW.... MGWIRQ.VPGQGLEWLVS YHSSDHTNY. APSIQG.R.FTASKDT..SNNIFSLDMTSLKIEDTATYYC AR
#c AY548354 ,IGHV2S9 DVVLTQPDE.ETGRPGGSLKLTCKTS GFDLSNYW.... MGWIRQ.VPGQGLEWLVS YHSSDHSNY. APSIQG.R.FTASKDT..SNNIFSLDMTSLKIEDTATYYC AR
#c AY548357 ,IGHV2S10 DIVLTQPDE.ETGRPGGSLKLTCKTS GFDLSGKY.... MSWIRQ.VPGQGLEWLVS YRSKSNEYY. APGILG.R.FTASKEI..SNNIFSLDMRTLKIEDTAYYYC VA
#c AY548358 ,IGHV2S11 DVVLTQPDE.ETGRPRGSLKLTCKTS GFDLSNSY.... IGWIRQ.VPGQGLEWLAS ISSSGSSYY. APSNSG.S.IYCVQNT..SNTSFLLDMTSLKIEDTAIYYC AR
#c AY548359 ,IGHV2S12(1) EIVLTQPDA.ETGRPGGSLKLTCKTS GFNLGGYW.... MFWVRQ.LPGMGLEWLVS CATSSNSNY. LAINSA.R.FTASKDT..TNNIFSLDMRSLTIEDSAIYYC AR
#c AY548360 ,IGHV2S13
DVVLTQPDE.ETGHPGSSLRLTCKTS GFSLSHVL.... DGWIRQ.VPGQGLEWLAS CYTLGGSYY. APSIQG.R.FTASKDT..ANNIFSLDMTTLKIEDTAIYYC AR
#c AY548361 ,IGHV2S14 DVVLTQNEA.ETGRPGGSLKLTCKTS GFDLSGYW.... MFWIRQ.VPGQGLEWLVS CATSSNSNY. LAINSA.R.FTASKDT..TNNIFSLDMRSLTIEDSAIYYC AR
#c AY548355 ,IGHV3S1(1) EIVLTQPDA.ETGRPRGSLKLNCKTS GFNLGSNY.... MFWVRQ.LPGMGLEWLLY YYSSSGIGT. TSIIKG.R.FTATKDT..SNNIFSLEMTSLNFDDESIYYC AT
#c AY548356 ,IGHV4S1   VIVLAQPER.ETGHPGGSLRLTCKTS GFDLNELR.... MGWIRQ.VTGPGVADYLA SNHCDLL... SRTSSG.I.GLLSADT..SNNIFSLDMTSLKIEDTAMYYC AL
#c AY548362 ,IGHV5S1 QVVLMQVEK.ATGHVGDSLRLTCKTS GFTLENAW.... MSWIRE.LPGQGLEWLVS YFEENDNYY. ALGIQS.R.FTASKDL..SNNIFALSMTRLRFEDTAIYYC AI In italics, IMGT corrected translations.

#c: rearranged cDNA
(1): The translation in the flat files is different from that published in Fig.2 in Immunology and Cell Biology, 74, 357-364, (1996)  PMID: 8872187. Amino acid sequences shown in that Protein display were corrected by IMGT. The typing errors in the flat files are the following:
AY548349: Insertion of 6 individual nucleotides (g) between nucleotides 180 and 256.
AY548359: g102>c, W34>C and deletion of three nucleotides between 121 and 156.
AY548355: three individual nucleotide insertions between nucleotides 145 and 160.
Nucleotide and amino acid Numbering is according to the IMGT unique numbering  PMID: 12477501.


Created: 06/07/2000
Last updated: Wednesday, 29-Jun-2011 17:05:54 CEST
Authors: Dominique Scaviner, Joumana Jabado Michaloud and Lorena Betancourt
Contact: Marie-Paule Lefranc

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