Protein display: African clawed frog (Xenopus laevis) IGH V-REGIONs

Only the *01 allele of each functional or ORF V-REGION is shown.

Letters in red correspond to amino acids which are polymorphic in the other alleles.
For C-REGIONs, letters in bold correspond to additional positions in the IMGT unique numbering.
For C-REGIONs, letters between parentheses correspond to amino acids resulting from the splicing.

Dots indicate gaps according to the IMGT unique numbering. Blanks at the 5' and/or 3' end indicate partial sequences.

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CH-S and in pages edited before 14/10/2009).

_________________________________________________________________________________________________________________________________________________

       IGHV                         FR1-IMGT           CDR1-IMGT       FR2-IMGT     CDR2-IMGT                 FR3-IMGT                   CDR3-IMGT
       gene                          (1-26)             (27-38)        (39-55)       (56-65)                  (66-104)                   (105-115)
_____________________________ __________________________ ____________ _________________ __________ _______________________________________ ___________
                              1       10        20         30         40        50         60         70        80        90       100        110
                              .........|.........|...... ...|........ .|.........|..... ....|..... ....|.........|.........|.........|.... .....|.....

       Y00380  ,IGHV1S1       DVQLAQSES.VVIKPGGSHKLSCTAS GFTFSSYW.... MSWVRQAPGKGLQWESR ISDGGGST.. YYADSVK.GRFTISRDNNNNKLYLQMNNLKTEDTAMYYC ARH........  
    #c M24673  ,IGHV1S2       EVQLAQSES.VMIKPGGSHKLSCTAS GFTFSSTW.... MYWVRQTPGKGLQWLCH IHPDGSSA.. YYADSVK.GRFTISRDNNNNKFYLQMNNLQTEDTAVYYC AR
    #c M94850  ,IGHV1S3       EVQLAQSES.VVIKPGGSHKLSCTAS GFTFSDHW.... MSWVRQAPGKGLQWVSN IKYDGAET.. NYADSVK.GRFTISRDNNNNKLYLQMNNLQTEDTAVYYC AR
    #c M30024  ,IGHV1S4       DVQLDQSES..VIKPGGSHKLSSTAS GFTFSSYW.... MSWVRQAPGKGLQWVSL ISSDGGST.. YYADSVK.GRFTISRDNNNNKLYLQMNNLQTEDTAVYYC TR
    #c M94841  ,IGHV1S5       DIQLDQSEP.VVIKPGGSHKLSCTAS GFTFSGYY.... MHWIRQAPGKGLQWVSR ISSDGGST.. VYADSVK.GRFTISRDNNNNKLYLQMNNLQTEDAAVYYC AR
    #c M94854  ,IGHV1S6       DVQLAQSES.VVIKPGGSHKLSCTAS GFTFSDHW.... MNWVRQAPGKGLQWLSR IYDASHI... YYADSVK.GRFTISRDNNNNKLYLQMNNLQTEDTAVYYC RD
    #c M94840  ,IGHV1S7       DVQLDQSEP.VVIKPGGSHKLSCTAS GFTFSSYG.... MGWVRQAPGKGLQWVSA ISSDGGST.. YYADSVK.GRFTISRDNNNNKLYLQMNNLQTEDTAVYYC TR
    #c M94845  ,IGHV1S8       DVQLDQSES.VVIKPGGSHKLSCTAS GFTFSSYG.... MSWVRQAPGKGLQWVSY ISSGGGTI.. YYADSVK.GRFTISRDNNNNKLFLQMNNLQTEDTAVYYC AR
    #c M94853  ,IGHV1S9       DVQLDQSEP.VVIKPGGSHKLSCTAS GFTFSTTW.... MSWVRQSPGNGLQWVSR IYDASNI... NYADSVK.GRFTVSKDNNNNKLYLQMNNLQTEDTAVYYC TT
    #c M94843  ,IGHV1S10      DVQLVQSEP.VVIKPGGSHKLSCTAS GFTFSSTW.... MNWVRQAPGKGLQWVSR ISSGSGSNT. YYADSVK.GRFTISRDNNNNKLYLQMNNLQTEDTAVYYC ATK
    #c M94851  ,IGHV1S11      DVQLDQSES.VVIKPGGSHKLSCTAS GFTFSSYS.... MHWIRQAPGRGLQWVSA ISNGGTT... YYADSVK.GRFTISRDNNNNKLYLQMNNLQTEDTGVYYC AR
    #c M94839  ,IGHV1S12      DVQLAQSES.VVIKPGGSHKLSCTAS GFTFSSTW.... MYWVRQAPGKGLQWLCH IHPDGSSA.. YYADSVK.GRFTISRDNKNNKLYLQMNNLQTEDTAMYYC AR
    #c M94844  ,IGHV1S13      DVQLDQSES.VVIKPGGSHKLSCTAS GFTFSSYG.... MGWVRQAPGKGLQWVSA ISSNGGST.. VYADSVK.GRFTISRDNNNNKLYLQMNNLQTEETAVYYC AR
    #c M94847  ,IGHV1S14      DVQLAQSEP.VVIKLGGSHKLSCTAS GFTFSDYW.... MHWVRQAPGKGLQWLGE IHPNGGTT.. NYADSVK.GRFTISRDNNNNKLYLEMTNLQTEDTAVYYC AT
    #c M94849  ,IGHV1S15      DMQLDQSES.VVIKPGGSHKLSCTAS GFTFSDYW.... MSWVRQAPGKGLQWLSD INYDGSTT.. RYADSVK.GRFTISRDNNNNKLYLQMNNLQTEDMAVYYC VRY
    #c M94842  ,IGHV1S16      DVQLAQSES.VVIKPGGSHKLSCTAS GFTFIGHW.... MHWVRQAPGKRLQWLSD INYDGSTT.. RYADSVK.GRFTISRDNNNNKLYLQINNLQTEDTAVYYC TRY
    #c M94848  ,IGHV1S17      DVQLAQSEP.VVIKPGGSHKLSCTAS GFTFSSYW.... MDWVRQAPGKGLQWVSD INYDGAET.. YYADSVK.GRFTISRDNNNNKLYLQMNNLQTEDTAVYYC AR
    #c M94846  ,IGHV1S18      DVQLAQSES.VVIKPGGSHKLSCTAS GFTFSSNW.... MNWVRQAPGKGLQWVSY ISNDGSGT.. YYPSSFK.GRFTISRDNNNNKLYLQMNNLQTEDTAVYYC SSVTQ
    #c M94852  ,IGHV1S19      DVQLAQSEP.VVIKPGGSHKLSCTAS GFTFSDYW.... MNWIRQAPGKGLQWVSA ISNGGST... YYADSVK.GEF
    #c M30026  ,IGHV1S20                                                            FIS FPSGTKT... YY?DSVK.GRFTISRDNNNNKLYLQMNNLQTEDTAVYYC TR
    #c M24674  ,IGHV2S1         TLQESGP.GTVKPSESLRLTCTVS GFEITNYG.... LSWIRQPPGKGLEWIGT IVTGGNT... YIADILK.NRVTITKDNGKKQVYLQMTAMEVKDTAMYYC GR
    #c M30025  ,IGHV2S2        QTLQESGP.GTVKPSESLRLTCTVS GFDLTSYG.... VCWIRQPPGKGLEWIGV VWNTGGT... AITDSIK.NRVTFTKDNGKKQVYLQMTGMEVKDTAMYYC AR
    #c M30027  ,IGHV2S3        QTLQESGP.GTVKPSESLRLTCTVS GFDLTSYA.... VSWIRQPPGKGLEWIGH TT........ GIADSLK.NRVTITKDNGKKQVYLQMTGMEVKDTAMYYC AR
    #c M30028  ,IGHV2S4        QTLQESGP.RTVKPSESLRLTCTVS GFELTRYA.... VNWMRQPPGKGPEWIGE VYGSGGT... AFADSLK.NRVTITKDNGKKQVYLQMTGMEVKDTAMYYC AD
    #c M30029  ,IGHV2S5          VQESGP.GTVKPSESLRLTCTVS GFELTSYH.... MHWTRQPTGKGLEWIGA VWYHGGT... ALADSLK.SRVTITRDTGKKQVYLQMTGMEVKDTAMYYC AR
    #c M30030  ,IGHV2S6         ALQESGP.GTVKPSESLRLTCTVS GFELTSFH.... ISWIRQPPGKGLEWIGA AWADGST... AIADSLK.NRVTITKDNGKKQVYLQMTGMEVKDTAMYYC AR
    #c M24675  ,IGHV3S1       QISLTQPGT.VTVKPSEVLQLTCKVT GASLTDSSKIAC VQWVRQPVGKGLEWLGG IWYEASL... HYSQSLK.GRVTVSRDTNKGEVYLKLTGMKPEETAVYYC AT
    #c M30031  ,IGHV3S2       QISLIQPGA.VTVKPSEVLQLTCKVT GASLTDRSKVYA VHWVRQPAGKGLEWLGE IRYNAGT... SYAQSLQ.GRITVSRDTNKGEVYLKLTGMKPEETAVYYC AR
    #c M30032  ,IGHV3S3                                                                                SLQ.GRVTVSRDTNKGEVYLKLTGMKPEETAVYYC TR 
    #c M30033  ,IGHV3S4                                                                                       AASRDTNKGEVYLKLTGMKPEETAVYYC AI
    #c M24676  ,IGHV4S1         LLSQKAS.EIANVGTSILLQCEVS GYNINDHH.... MHWVRQAPGPGTIEWLA AYRSDTT... YISESFK.ERVTPST..SGSTAQLRISKLSRSDTATYYC AT
    #c M24677  ,IGHV5S1       DIELVQPSS.EIKSPGESVKLSCKTS GYTFTDYW.... IHWIQQVPGKGLQWMGV IDPSDAYT.. SYSPSYQ.GRCQISTDNSQSTAFLQLNNLKVEDTAIYYC AR
    #c M24678  ,IGHV6S1       QITLDQPGS.TLVKPSDTLKIACKVS VSVSSYY..... WTWVRQTPGKGLEYMGR ITSSGGT... EHTPAFQ.NRVTLTRDAAKNEIYLALSSMRSEDSGTYYC AS
    #c M24679  ,IGHV7S1       EVTVSLSVP.ELVKPSEKLKLVCKVS GALITDGSKIHA VDYIRQFSGSTFEFLAH INYAAGT... ALNPDLK.SRLTLSRDTAKNEAYLEISGMTAGDTAMYYC AK
    #c M24680  ,IGHV8S1       QITLDQPGS.AVVNPSGTLKLSCKVS VSVTSQH..... WAWTWQAPGKGLEYIGY LNSDGSS... YPAPSFQ.SRVTLTRDSSKNEISLQMTSMKSEDSGTYYC AN
    #c M30034  ,IGHV8S2                                               WAWTWQAPGKGLEYIGY LNSGGSS... YPAPSFK.SRATFTRDTSKNEISLQMTSMKSEDSGTYFC AR
    #c M30035  ,IGHV8S3                                                                                            ASKNEISLQMTSMKSEDSGTYFC AR
    #c M24681  ,IGHV9S1       EILLTQSNP.EIKKPGESVKITCKTS GFTFTDYY.... MHWVRQAPRGGLQWIGG IDPDDGET.. NYLSSLE.ERLTVTTDNSISTVYLEISRLMLEDTATYYC AR
    #c M30036  ,IGHV9S2       EILLTQSNP.ENKKPGESVKITCKTS GFTFIDYY.... MHWVRQAPRGGLQWIGG IDPDDGET.. TYLSSLE.ERLTVTTDNSISTVYLDISRLMLEDTATYYC AR         
    #c M27254  ,IGHV10S1                                                   QTPGKGLEWLGA IWYDGSKT.. VYAKSVE.GRLVITRNNAEQVTFMELKNLVYQDTAVYYC TR
    #c M27255  ,IGHV11S1                          LTCKTS GYDFGSYG.... MNWVQQIPGKGLAWVAN INTETGNT.. VYPSSFK.GRFTITKDNSISTAYLEISSLKPEDTATYYC AN
       

#c: rearranged cDNA.


Created: 18/07/2003
Author: Delphine Guiraudou
Contact:
Marie-Paule Lefranc

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Research, 27, 209-212 (1999) Cover of NAR; Ruiz, M. et al., Nucleic Acids Research, 28, 219-221 (2000); Lefranc, M.-P., Nucleic Acids Research, 29, 207-209 (2001); Lefranc, M.-P., Nucleic Acids Res., 31, 307-310 (2003); Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5, 45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33, D593-D597 (2005) Full text; Lefranc, M.-P. et al., Nucleic Acids Research 2009 37: D1006-D1012; doi:10.1093/nar/gkn838 Full text.


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