| MHC class | Species | IMGT gene and allele names (1) | gDNA (2) | Mouse strain | Mouse H2 haplotype (3) | cDNA (2) | IMGT/3D structure-DB (4) | gDNA EX1 (same allele) (2,5) | gDNA (other alleles) (2,5) |
|---|---|---|---|---|---|---|---|---|---|
| MHC-Ia | Homo sapiens | HLA-A*0201 | K02883 | 1oga_A | |||||
| HLA-B*0702 | AJ292075 | ||||||||
| HLA-Cw*0701 | Y18533 | Y18499 | |||||||
| Y18534 | |||||||||
| Mus musculus | H2-D1*02 | M18523 | C57BL/10 | b | 1juf_A | ||||
| H2-K1*01 | V00746/ V00747 | C57BL/10 | b | AK168517 | 1lk2_A | AF100956 | X01815 | ||
| H2-L*05 | V00752 | d | (1ld9_A) | L00127 | X14091/ X52916 | ||||
| MHC-Ib | Homo sapiens | HLA-E*01 | AF523277 | 1mhe_A | |||||
| HLA-F*01 | X17093 | ||||||||
| HLA-G*01 | J03027 | ||||||||
| Mus musculus | H2-M5*02 | L14279 | BALB/c | d | |||||
| H2-Q7*02 | X03210 | ||||||||
| H2-T3*01 | M11742 | C57BL/6 | b | ||||||
| MHC-I-like | Homo sapiens | MICA*01 | U56940 | 1hyr_C | L29411 | ||||
| MR1*01 | AL356267 | ||||||||
| RAET1N*01 | AL355497 | 1kcg_C | |||||||
| Mus musculus | AZGP1*01 | AF281658 | 129/Svj | 129 | |||||
| CD1D1*01 | X13170 | 1cd1_A | |||||||
| FCGRT*01 | D37872 | BALB/c | d |
| Species | IMGT gene and allele names (1) | gDNA (2) | Mouse strain | Mouse H2 haplotype (3) | cDNA (2) | Mouse strain | Mouse H2 haplotype (3) | IMGT/3D structure-DB (4) | gDNA EX1 (same allele) (2,5) | gDNA (other alleles) (2,5) | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MHC-IIa | Homo sapiens | HLA-DPA1*0103 | X03100 | ||||||||
| HLA-DPB1*0401 | M23907 | M23906 | |||||||||
| HLA-DQA1*0501 | Z84489 | 1s9v_A | |||||||||
| HLA-DQB1*0301 | M25325 | U92032 | |||||||||
| HLA-DRA*0101 | J00204 | 1fv1_D | J00203 | Z84814 | |||||||
| HLA-DRB1*1402 | AJ297583 | AL137064 | |||||||||
| Mus musculus | H2-AA*02 | AY740451 | B10.MOL1 | (w12) | V00832 | B10.A | k/d2? | 1iak_A | AF027865 | ||
| H2-AB*02 | AY740477 | B10.SNA70 | (w8) | M13538 | B10.A | k/d2? | 1iak_B | AF027865 | |||
| H2-EA*02 | K00971 | BALB/c | d | 1fng_C | |||||||
| AY303782 | BALB.K | k | |||||||||
| H2-EB1*01 | AF050157 | 129 | bc | ||||||||
| MHC-IIb | Homo sapiens | HLA-DMA*01 | X62744 | (1hdm_A) | X76775 | ||||||
| HLA-DMB*01 | X76776 | (1hdm_B) | |||||||||
| HLA-DOA*01 | X02882 | ||||||||||
| HLA-DOB*01 | X87344 | ||||||||||
| Mus musculus | H2-DMA*01 | AF100956 | 129/Svj | 129 | 1k8i_A | ||||||
| H2-DMB1*02 | U35323 | BALB/c | d | ||||||||
| H2-DOA*01 | C57BL/6J | b | AK020594 | AF100956 | |||||||
| H2-DOB*01 | C57BL/6J | b | AK053233 | M11800 |
| (1) | Owing to a lesser degree of polymorphism of the nonclassical Homo sapiens MHC-Ib and MHC-IIb genes, compared to the classical MHC-Ia and MHC-IIa genes, a 2-digit is used for their allele description (IMGT Scientific chart, http://www.imgt.org): *01 refers to *0101 found in the literature. The allele nomenclature of the highly polymorphic Homo sapiens classical MHC-Ia and MHC-IIa is according to HLA-DB [1]. Mus musculus H2 alleles are numbered starting from allele *01 (sequence from strain C57BL/6). Homo sapiens and Mus musculus MHC-I-like alleles are numbered starting from allele *01 that corresponds to the IMGT reference sequence (IMGT Repertoire, http://www.imgt.org). The H2-PA gene (H2-PA*01 accession number D64112, strain C57BL/6) that is a pseudogene, and the H2-PB gene that has not yet been identified, are not included in the table. |
| (2) | EMBL/GenBank/DDBJ nucleotide sequence accession numbers. gDNA: genomic DNA; cDNA: complementary DNA. |
| (3) | From "Mouse H2 haplotypes and polymorphisms" [2,3]. |
| (4) | Chain codes from IMGT/3Dstructure-DB, http://www.imgt.org [4]. The code is shown within parentheses for 3D structures in which the chain sequence differs from the translation of the corresponding representative allele in column 3. |
| (5) | Accession numbers that were necessary for splicing site identification: "same allele" refers to the allele in column 3, "other alleles" refers to alleles other than the ones in column 3. |
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