IMGT reference directory: J-REGION Chondrichthyes IGHJ set

http://www.imgt.org

The IMGT reference directory contains sets of allele sequences isolated from the IMGT reference sequences. By definition, these sets contain one sequence for each allele.

Authors: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT, and cited as "IMGT, the international ImMunoGeneTics information system® http://www.imgt.org (Initiator and coordinator: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Research, 27, 209-212 (1999) Cover of NAR; Ruiz, M. et al., Nucleic Acids Research, 28, 219-221 (2000); Lefranc, M.-P., Nucleic Acids Research, 29, 207-209 (2001), Lefranc, M.-P., Nucleic Acids Res., 31, 307-310 (2003) Full text, Lefranc, M.-P. et al., Nucleic Acids Res., 33, D593-D597 (2005) Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

Species are designated with "short" names (the three first letters from the genus and species names):

for Raja erinacea (Little skate): Rajeri
for Raja eglanteria (Clearnose skate): Rajegl
for Carcharhinus leucas (Bull shark): Carleu
for Carcharhinus plumbeus (Sandbar shark): Carplu
for Heterodontus francisci (Horned shark): Hetfra
for Hydrolagus colliei (Spotted ratfish): Hydcol
for Ginglyomostoma cirratum (Nurse shark): Gincir
for Orectolobus maculatus (Spotted wobbegong shark) : Oremac

>U40560_IGHJ1*01_Carplu             
TTTGATTATTGGGGGAATGGAACCTTCGTGGAAGTGACTTCA
>U50605_IGHJ2*01_Carplu             
TTTGATTTTTGGGGGAGCGGAACCTTCGTGGAAGTGACTTCA
>U50604_IGHJ3*01_Carplu             
TTTGATTACTGGGGGAGCGGAACCTTCGTGGAAGTGACTTCA
>U50607_IGHJ4*01_Carplu             
GGGGATTATTGGGGGAAGGGAACCTTCGTGGAAGTGACTTCA
>U50606_IGHJ5*01_Carplu             
TCACGTTATTGGGGGAGCGGAACCTTCGTGGAAGTGACTTCA
>U50608_IGHJ6*01_Carplu             
TTTGATTATTGGGGGAGCGGAACCTTCATGGAAGTGACTTCA
>U50609_IGHJ7*01_Carplu             
TTTGATTATTGGGGGAATGGAACCTTCGTGGAAGTGACTTCA
>U50610_IGHJ8*01_Carplu             
TTTGATGTCTGGGGGAATGGAACCTTCGTGGAAGTGACTTCA
>U50611_IGHJ1*01_Carleu
TATCTTGATTATTGGGGGAGCGGAACCTTCGTGGAAGTCAATTCA
>U50612_IGHJ2*01_Carleu
GATTATTGGGGGAGCGGAACCTTCGTGGAAGTGACTTCA
>U50613_IGHJ3*01_Carleu
TATCTTGATTATTGGGGGAGCGGAACCTCCCTGGAAGTGACTTCA
>U50614_IGHJ4*01_Carleu
CTTGATGGTTGGGGAAGCGGAACCTTCTTGGAAGTGACTCCA
>L38965_IGHJ1*01_Gincir                   
ACAGCTATGAATACGGAGGTGGCACTGTCGTGACTGTAAATCCT
>L38966_IGHJ2*01_Gincir               
ACAGCTTTGATGAATACGGAGGTGGCACTGTCGTGACTG
>L38967_IGHJ3*01_Gincir                   
ACAGCTATGAATACGGAGGTGGCACTGTCGTGACTG
>L38968_IGHJ4*01_Gincir               
ACAACTATGCTGCATGCGGCGACGGCACTGCCGTGACTT
>M92851_IGHJ5*01_Gincir                          
GGTTACTGGGGACAAGGAACCATGGTGACCGTGACTACA
>AF327520_IGHJ6*01_Gincir                  
GCGTTGGACTACTGGGGACAAGGGACCAGAGTAACGGTAACT
>U18701_IGHJ7*01_Gincir                              
GCATGCGGATCAGGCACTGCCGTGACTGTTACTCCT
>U18680_IGHJ8*01_Gincir                                  
TACGGAGGTGGCACTGGCGTGACTGTGAATCCT
>U18716_IGHJ9*01_Gincir                                  
TATGGAGGTGGCACTGTCGTGACTGTGAATCCT
>U18717_IGHJ10*01_Gincir                             
GCATGCGGAGATGGCACTTTCGTGACTGTGAATCCT
>U18686_IGHJ11*01_Gincir                                 
TACGGAGCTGACACTGTCGTGACTGTCAATCCT
>U18687_IGHJ12*01_Gincir                     
TATGCTGCATGTGGAGCTGGCACTGCCGTGACTGTGAATCCT
>U18714_IGHJ13*01_Gincir                                 
TACGGCAGTGGCACTGTACTGACTGTGAATCCT
>U18718_IGHJ14*01_Gincir                             
GCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18713_IGHJ15*01_Gincir                                 
TACGGAGGTGGCACTGTCGTGACTGTCAATCCT
>U18700_IGHJ16*01_Gincir             
ATCTATGATGAATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18702_IGHJ17*01_Gincir                                
TGCGGAGATGGCACTGTCGTGACTGTGAATCCT
>U18715_IGHJ18*01_Gincir                                 
TGCGGAGGTGGCACTGTCGTGACTGTGAATCCT
>U18726_IGHJ19*01_Gincir                                 
TACGGAGGTGGCACTGTCGTGACTGTGAATCCT
>U18693_IGHJ20*01_Gincir                     
TATGCTGCAGTAGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18725_IGHJ21*01_Gincir                                
TGCGGAGAGGGCACTGCCGTGACTGTCAACCCT
>U18685_IGHJ22*01_Gincir                         
GCTGCATGCGGTCATGGCACTGCCGTGACTGTGACTTCT
>U18688_IGHJ23*01_Gincir                              
TACGGAGGTGGCACTGTCGTGACTGTGAATCCT
>U18724_IGHJ24*01_Gincir                                 
TGCGGCGACGGCACTACCGTGACTGTTCATCCT
>U18696_IGHJ25*01_Gincir                     
TATGCTGCCTGCGGACCTGGCACTACCGTGACTGTGAATCCT
>U18705_IGHJ26*01_Gincir                     
TATGCTGCATGCGGACATGGCACTGCCGTGACTGTGAATGCC
>U18703_IGHJ27*01_Gincir                             
GCATGCGGTCATGGAACTGCCGTGACTGTGAATCCT
>U18682_IGHJ28*01_Gincir                                 
TGCGGAGATGGAACTGCCGTGACGGTGAATCCT
>U18706_IGHJ29*01_Gincir                     
TATGCTGCATGCGGAGATGCCACTGCCGTGACTGTGAATCCT
>U18704_IGHJ30*01_Gincir                             
GCATGTGGAGATGGCACTGTCGTGACTGTGAGTCCT
>U18681_IGHJ31*01_Gincir                                 
TGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18684_IGHJ32*01_Gincir                     
TATGCTGCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18708_IGHJ33*01_Gincir                                 
TGCGGAGATAACACTGCCGTGACTGTGAATCCT
>U18722_IGHJ34*01_Gincir                             
GCATGCGGACATGGCACTACAGTGACTGTCGCTCCA
>U18683_IGHJ35*01_Gincir                                
TGCGGAGATGGCACTGTTTTGACTGTGAATCCT
>U18690_IGHJ36*01_Gincir                         
GCTGCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18695_IGHJ37*01_Gincir                             
GCATGCGGACTCGGCACTGCCGTGACTGTGAATCCT
>U18712_IGHJ38*01_Gincir                     
TATGCTGCGTGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18719_IGHJ39*01_Gincir                         
GCTGCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18691_IGHJ40*01_Gincir                                 
TACGGAGGTGGCACTGTCGTGACTGTGAATCCT
>U18694_IGHJ41*01_Gincir                             
GCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18720_IGHJ42*01_Gincir                         
GCTGCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18698_IGHJ43*01_Gincir                                 
TGCGGAGGCGGCACTGACGTGACTGTGAATACG
>U18692_IGHJ44*01_Gincir                         
GCTGCATGCGGAGATGGCACTGCCGTGACTGTGAAT
>U18707_IGHJ45*01_Gincir                     
TATGCTGCATGCGGAGATGGCACTGC.GTGACTGTGAATCCT
>U18699_IGHJ46*01_Gincir                     
TATGCTGCATGTGGAGATGGCACCTCCGTGACTGTGAATCCT
>U18710_IGHJ47*01_Gincir                     
TATGCTGCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18689_IGHJ48*01_Gincir                         
GCTGCCTGCGGAGAGGGCACTGCCGTGACTGTGAATCCT
>U18709_IGHJ49*01_Gincir                     
TATGCTGCATGCGGGGACGGCACTACCGTGACTGTGAAGCCT
>U51450_IGHJ50*01_Gincir                     
CTTGACTACTGGGGAGACGGAACCTTTCTGGAAGTGACTTCA
>U18697_IGHJ51*01_Gincir                                 
TGCGGAGATGGCACTGCCGTGACTGTGAACCCT
>U18723_IGHJ52*01_Gincir                             
GCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>X13447_IGHJ1*01_Hetfra        
ACGCCATGGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCAG
>X13449_IGHJ2*01_Hetfra                 
TCTATGGACTACTGGGGACAAGGGACCATGGTGACAGTGACTGCA 
>Z11777_IGHJ3*01_Hetfra              
ACTATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCAG
>Z11776_IGHJ4*01_Hetfra              
ACATCATGGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCAG
>X13448_IGHJ5*01_Hetfra             
ACACCATGGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCAG
>Z11779_IGHJ6*01_Hetfra              
ACTATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCAG
>Z11781_IGHJ7*01_Hetfra                 
TATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCA
>Z11782_IGHJ8*01_Hetfra                     
CTCGCTCACTGGGGACAAGGGACCATGGTGACGGTGACTGCA
>Z11783_IGHJ9*01_Hetfra             
ACTACCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCA
>Z11784_IGHJ10*01_Hetfra                    
CTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCA
>Z11785_IGHJ11*01_Hetfra                 
ATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGAA
>Z11786_IGHJ12*01_Hetfra             
 CTATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGTA
>Z11787_IGHJ13*01_Hetfra             
ACTATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTAAGTGCA
>Z11788_IGHJ14*01_Hetfra             
 CTATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCA
>Z11789_IGHJ15*01_Hetfra                    
CTCGACTACTGGGGACAGGGGACCATGGTGACGGTGACTGCA
>Z11791_IGHJ16*01_Hetfra              
CACCATGGACTACTGGGGACAAGGGACCATGGTGACGGTGACT TCA
>Z11792_IGHJ17*01_Hetfra                     
TGGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGTA
>X03748_IGHJ18*01_Hetfra            
TACTATTTTGACTTTTGGGGACAAGGGACCATGGTGACGGTGACTGCA
>AF003840_IGHJ1*01_Hydcol     
ACTATAACCCTTACTACTGGGGACGAGGCACGAAGGTGACGGTGACTGAAG                    
>AF003946_IGHJ2*01_Hydcol                   
GACTACTGGGGACAAGGCACCATGGTGACAGTGACTGACG  
>AF003839_IGHJ3*01_Hydcol                
CTTGACTACTGGGGACAAGGGACCATGCTGACAGTGACTGAC    
>AF004359_IGHJ4*01_Hydcol                    
GACTACTGGGGACAAGGCACCATGGTGACAGTGACTGAC    
>AF004360_IGHJ5*01_Hydcol                    
GACTACTGGGGACAAGGCACCATGGTGACAGTGACTGAC    
>AF003853_IGHJ6*01_Hydcol            
AACCCTTACTACTGGGGACGAGGCACGAAGGTGACAGTGACTGAA    
>AF003841_IGHJ7*01_Hydcol         
ACTACCTTGACTGCTGGGGACAAGGCACCATGGTGACAGTGACTAACG               
>AF003854_IGHJ8*01_Hydcol                    
GACTACTGGGGACAAGGGACCATGCTGACAGTGAATGAT     
>AF003855_IGHJ9*01_Hydcol                    
GACTACTGGGGACAAGGGACCATGCTGACAGTGAATGAT     
>AF003856_IGHJ10*01_Hydcol           
TATCTTGACTACTGGGGACAAAGGACCATGCTGACAGTGAATGAC     
>AF003857_IGHJ11*01_Hydcol                   
GACTACTGGGGACAAGGGACCATGCTGACAGTGACTGAC     
>AF003858_IGHJ12*01_Hydcol           
TATCTTGACTACTGGGGACAAGGGACCATGCTCACAGTGACTGAC     
>AF003859_IGHJ13*01_Hydcol           
TATCTTGACTACTGGGGACAAGGGACCATGCTGACAGTGACTGAC     
>AF003860_IGHJ14*01_Hydcol          
TATCTTGACTACTGGGGACAAGGGACCATGCTGACAGTGACTGAC     
>AF003861_IGHJ15*01_Hydcol           
TATCTTGAATACTGGGGACAAGGGACCATGCTGACAGTGACTGAC     
>AF336087_IGHJ1*01_Oremac                 
CCCGAGAAAGGAGTTGGCACCGTACTGACCGTGAGA
>AF336088_IGHJ2*01_Oremac                 
GTGTGGTGGGGAGCTGGCACCGTACTGACCGTGAAA
>AF336089_IGHJ3*01_Oremac                 
GACTATAAAGGAGGTGACACCCTTTTGACCGTGAAA
>AF336090_IGHJ4*01_Oremac                         
GAAAGACCTGGCACCGCATTAACCGTGAAA
>AF336091_IGHJ5*01_Oremac                 
TACGAGAAAGGAGCTGGCACCGTACTGACCGTGAAA
>AF336092_IGHJ6*01_Oremac                 
AACGAGAAAGGAGCTGGCACCGTACTGACCGTGAAA
>AF336093_IGHJ7*01_Oremac                 
GACGAGGAAGGGGCTGGCACCGTACTGACCGTGAAA
>AF336094_IGHJ8*01_Oremac                         
GGGGGAGCTGGCACCGTATTAACCGTGAAA
>U08009_IGHJ1*01_Rajegl                       
TCTTGACTACTGGGGTGCAGGAACCTCGCTGACAGAGACTTCAG
>U08010_IGHJ2*01_Rajegl                     
CTTGACTACTGGGGTGCAGGAACCTCGCTGACAGTGACTTCA     
>U08011_IGHJ3*01_Rajegl                 
TCTTGACTACTGGGGTGCAGGAACCTCGCTGACAGTGACTTCA
>U08012_IGHJ4*01_Rajegl            
CTTGAATACTGGGGTGCAGGAACCTCGCTGACAGTGACTTCA
>X15124_IGHJ1*01_Rajeri                       
ACTATCTTGACTACTGGGGAGAAGGCACCATGGTGACGGTAACCAGCG
>X15125_IGHJ2*01_Rajeri                      
ACTCTCCTAACTACTGGGGAGGAGGCAGCATGGTGACGGTAACCTGCG  
>X16146_IGHJ3*01_Rajeri                     
TATCCTGACTACTGGGGAGGAGGAACCATGGTGACGGTAACCAGCG  
>M29672_IGHJ4*01_Rajeri                     
TGGCTTGAGTACTGGGGTGCAGGAACCTCGCTGACAGTGACTTCA
>M29679_IGHJ5*01_Rajeri                      
ACTATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCA

Created: : 31/01/2002
Last updated : 22/07/2003

-> IMGT/V-QUEST Search page
-> IMGT Repertoire
-> IMGT Scientific chart
-> IMGT Home page