Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add information about removed genes/alleles.
May 15th, 2025.

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: A scoring system is employed to indicate the number of IMGT/LIGM-DB reference sequences and other sequences from the literature in which an IG or TR gene allele has been identified and annotated.

Removed genes/alleles
If a gene/allele existence or name has to be changed, the old name or gene/allele would be deleted and its name won't be reused. They are kept in the gene table for historical reasons.
A single star ()
indicates that an IG or TR gene allele is annotated in the reference sequence only.
Two stars ()
indicate that an IG or TR gene allele is annotated in its reference sequence and in one sequence from the literature.
Three stars ()
indicate that an IG or TR gene allele is annotated in its reference sequence and in at least two sequences from the literature.
In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of Bornean orangutan (Pongo pygmaeus) IGHD IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesIsolateAccession
numbers		Positions
in the sequence
(D-GENE-UNIT)
or D-REGION (*)		Secondary
accession
numbers		Clone namesIsolateAccession
numbers		Positions
in the sequence
(D-GENE-UNIT)
or D-REGION (*)
IGHDIGHD1-1 IGHD1-1*01 F 14 AG05252 IMGT000144 [1] MAP 1345010-1345082
IGHDIGHD1-1 IGHD1-1*01 F 14 AG05252 IMGT000229 [3] MAP 1345014-1345086 AG05252 IMGT000166 [2] 1275740-1275812
AG05252 IMGT000230 [3] 1275740-1275812
IGHDIGHD1-6 IGHD1-6*01 ORF (1) 14 AG05252 IMGT000144 [1] MAP 1353116-1353188
IGHDIGHD1-6 IGHD1-6*01 ORF (1) 14 AG05252 IMGT000229 [3] MAP 1353120-1353192 AG05252 IMGT000166 [2] 1283846-1283918
AG05252 IMGT000230 [3] 1283846-1283918
IGHDIGHD1-12 IGHD1-12*01 F 14 AG05252 IMGT000144 [1] MAP 1362564-1362636
IGHDIGHD1-12 IGHD1-12*01 F 14 AG05252 IMGT000229 [3] MAP 1362568-1362640 AG05252 IMGT000166 [2] 1293286-1293358
AG05252 IMGT000230 [3] 1293286-1293358
IGHDIGHD1-18 IGHD1-18*01 F 14 AG05252 IMGT000144 [1] MAP 1371943-1372015
IGHDIGHD1-18 IGHD1-18*01 F 14 AG05252 IMGT000229 [3] MAP 1371947-1372019
IGHDIGHD1-18 IGHD1-18*02 F 14 AG05252 IMGT000166 [2] MAP 1302664-1302736
IGHDIGHD1-18 IGHD1-18*02 F 14 AG05252 IMGT000230 [3] MAP 1302664-1302736
IGHDIGHD1-24 IGHD1-24*01 F 14 AG05252 IMGT000144 [1] MAP 1381349-1381421
IGHDIGHD1-24 IGHD1-24*01 F 14 AG05252 IMGT000229 [3] MAP 1381353-1381425 AG05252 IMGT000166 [2] 1312069-1312141
AG05252 IMGT000230 [3] 1312069-1312141
IGHDIGHD1-30 IGHD1-30*01 ORF (2) 14 AG05252 IMGT000144 [1] MAP 1391281-1391356
IGHDIGHD1-30 IGHD1-30*01 ORF (2) 14 AG05252 IMGT000229 [3] MAP 1391285-1391360
IGHDIGHD1-30 IGHD1-30*02 ORF (2) 14 AG05252 IMGT000166 [2] MAP 1322002-1322077
IGHDIGHD1-30 IGHD1-30*02 ORF (2) 14 AG05252 IMGT000230 [3] MAP 1322002-1322077
IGHDIGHD2-7 IGHD2-7*01 F 14 AG05252 IMGT000144 [1] MAP 1355782-1355868
IGHDIGHD2-7 IGHD2-7*01 F 14 AG05252 IMGT000229 [3] MAP 1355786-1355872 AG05252 IMGT000166 [2] 1286518-1286604
AG05252 IMGT000230 [3] 1286518-1286604
IGHDIGHD2-13 IGHD2-13*01 F 14 AG05252 IMGT000144 [1] MAP 1365219-1365305
IGHDIGHD2-13 IGHD2-13*01 F 14 AG05252 IMGT000229 [3] MAP 1365223-1365309 AG05252 IMGT000166 [2] 1295940-1296026
AG05252 IMGT000230 [3] 1295940-1296026
IGHDIGHD2-19 IGHD2-19*01 F 14 AG05252 IMGT000144 [1] MAP 1374585-1374671
IGHDIGHD2-19 IGHD2-19*01 F 14 AG05252 IMGT000229 [3] MAP 1374589-1374675 AG05252 IMGT000166 [2] 1305306-1305392
AG05252 IMGT000230 [3] 1305306-1305392
IGHDIGHD2-25 IGHD2-25*01 F 14 AG05252 IMGT000144 [1] MAP 1384001-1384087
IGHDIGHD2-25 IGHD2-25*01 F 14 AG05252 IMGT000229 [3] MAP 1384005-1384091 AG05252 IMGT000166 [2] 1314722-1314808
AG05252 IMGT000230 [3] 1314722-1314808
IGHDIGHD3-2 IGHD3-2*01 F 14 AG05252 IMGT000144 [1] MAP 1349216-1349302
IGHDIGHD3-2 IGHD3-2*01 F 14 AG05252 IMGT000229 [3] MAP 1349220-1349306 AG05252 IMGT000166 [2] 1279946-1280032
AG05252 IMGT000230 [3] 1279946-1280032
IGHDIGHD3-8 IGHD3-8*01 F 14 AG05252 IMGT000144 [1] MAP 1358073-1358159
IGHDIGHD3-8 IGHD3-8*01 F 14 AG05252 IMGT000229 [3] MAP 1358077-1358163 AG05252 IMGT000166 [2] 1288809-1288895
AG05252 IMGT000230 [3] 1288809-1288895
IGHDIGHD3-14 IGHD3-14*01 F 14 AG05252 IMGT000144 [1] MAP 1367811-1367897
IGHDIGHD3-14 IGHD3-14*01 F 14 AG05252 IMGT000229 [3] MAP 1367815-1367901
IGHDIGHD3-14 IGHD3-14*02 F 14 AG05252 IMGT000166 [2] MAP 1298532-1298618
IGHDIGHD3-14 IGHD3-14*02 F 14 AG05252 IMGT000230 [3] MAP 1298532-1298618
IGHDIGHD3-20 IGHD3-20*01 F 14 AG05252 IMGT000144 [1] MAP 1376863-1376952
IGHDIGHD3-20 IGHD3-20*01 F 14 AG05252 IMGT000229 [3] MAP 1376867-1376956 AG05252 IMGT000166 [2] 1307584-1307673
AG05252 IMGT000230 [3] 1307584-1307673
IGHDIGHD3-26 IGHD3-26*01 F 14 AG05252 IMGT000144 [1] MAP 1386277-1386369
IGHDIGHD3-26 IGHD3-26*01 F 14 AG05252 IMGT000229 [3] MAP 1386281-1386373 AG05252 IMGT000166 [2] 1316998-1317090
AG05252 IMGT000230 [3] 1316998-1317090
IGHDIGHD4-3 IGHD4-3*01 ORF (3) 14 AG05252 IMGT000144 [1] MAP 1350115-1350186
IGHDIGHD4-3 IGHD4-3*01 ORF (3) 14 AG05252 IMGT000229 [3] MAP 1350119-1350190 AG05252 IMGT000166 [2] 1280845-1280915
AG05252 IMGT000230 [3] 1280845-1280915
IGHDIGHD4-9 IGHD4-9*01 ORF (4) 14 AG05252 IMGT000144 [1] MAP 1359223-1359294
IGHDIGHD4-9 IGHD4-9*01 ORF (4) 14 AG05252 IMGT000229 [3] MAP 1359227-1359298 AG05252 IMGT000166 [2] 1289959-1290030
AG05252 IMGT000230 [3] 1289959-1290030
IGHDIGHD4-15 IGHD4-15*01 F 14 AG05252 IMGT000144 [1] MAP 1368963-1369037
IGHDIGHD4-15 IGHD4-15*01 F 14 AG05252 IMGT000229 [3] MAP 1368967-1369041 AG05252 IMGT000166 [2] 1299684-1299758
AG05252 IMGT000230 [3] 1299684-1299758
IGHDIGHD4-21 IGHD4-21*01 F 14 AG05252 IMGT000144 [1] MAP 1378007-1378078
IGHDIGHD4-21 IGHD4-21*01 F 14 AG05252 IMGT000229 [3] MAP 1378011-1378082 AG05252 IMGT000166 [2] 1308727-1308798
AG05252 IMGT000230 [3] 1308727-1308798
IGHDIGHD4-27 IGHD4-27*01 ORF (5) 14 AG05252 IMGT000144 [1] MAP 1387436-1387510
IGHDIGHD4-27 IGHD4-27*01 ORF (5) 14 AG05252 IMGT000229 [3] MAP 1387440-1387514 AG05252 IMGT000166 [2] 1318157-1318231
AG05252 IMGT000230 [3] 1318157-1318231
IGHDIGHD5-4 IGHD5-4*01 F 14 AG05252 IMGT000144 [1] MAP 1351073-1351151
IGHDIGHD5-4 IGHD5-4*01 F 14 AG05252 IMGT000229 [3] MAP 1351077-1351155 AG05252 IMGT000166 [2] 1281803-1281881
AG05252 IMGT000230 [3] 1281803-1281881
IGHDIGHD5-10 IGHD5-10*01 F 14 AG05252 IMGT000144 [1] MAP 1360185-1360260
IGHDIGHD5-10 IGHD5-10*01 F 14 AG05252 IMGT000229 [3] MAP 1360189-1360264 AG05252 IMGT000166 [2] 1290921-1290996
AG05252 IMGT000230 [3] 1290921-1290996
IGHDIGHD5-16 IGHD5-16*01 ORF (6) 14 AG05252 IMGT000144 [1] MAP 1369921-1369996
IGHDIGHD5-16 IGHD5-16*01 ORF (6) 14 AG05252 IMGT000229 [3] MAP 1369925-1370000 AG05252 IMGT000166 [2] 1300642-1300717
AG05252 IMGT000230 [3] 1300642-1300717
IGHDIGHD5-22 IGHD5-22*01 ORF (7) 14 AG05252 IMGT000144 [1] MAP 1378969-1379047
IGHDIGHD5-22 IGHD5-22*01 ORF (7) 14 AG05252 IMGT000229 [3] MAP 1378973-1379051 AG05252 IMGT000166 [2] 1309689-1309767
AG05252 IMGT000230 [3] 1309689-1309767
IGHDIGHD5-28 IGHD5-28*01 ORF (8) 14 AG05252 IMGT000144 [1] MAP 1388401-1388476
IGHDIGHD5-28 IGHD5-28*01 ORF (8) 14 AG05252 IMGT000229 [3] MAP 1388405-1388480 AG05252 IMGT000166 [2] 1319122-1319197
AG05252 IMGT000230 [3] 1319122-1319197
IGHDIGHD6-5 IGHD6-5*01 ORF (9) 14 AG05252 IMGT000144 [1] MAP 1352943-1353019
IGHDIGHD6-5 IGHD6-5*01 ORF (9) 14 AG05252 IMGT000229 [3] MAP 1352947-1353023 AG05252 IMGT000166 [2] 1283673-1283749
AG05252 IMGT000230 [3] 1283673-1283749
IGHDIGHD6-11 IGHD6-11*01 F 14 AG05252 IMGT000144 [1] MAP 1362062-1362135
IGHDIGHD6-11 IGHD6-11*01 F 14 AG05252 IMGT000229 [3] MAP 1362066-1362139 AG05252 IMGT000166 [2] 1292783-1292856
AG05252 IMGT000230 [3] 1292783-1292856
IGHDIGHD6-17 IGHD6-17*01 F 14 AG05252 IMGT000144 [1] MAP 1371432-1371511
IGHDIGHD6-17 IGHD6-17*01 F 14 AG05252 IMGT000229 [3] MAP 1371436-1371515 AG05252 IMGT000166 [2] 1302153-1302232
AG05252 IMGT000230 [3] 1302153-1302232
IGHDIGHD6-23 IGHD6-23*01 F 14 AG05252 IMGT000144 [1] MAP 1380838-1380914
IGHDIGHD6-23 IGHD6-23*01 F 14 AG05252 IMGT000229 [3] MAP 1380842-1380918 AG05252 IMGT000166 [2] 1311558-1311634
AG05252 IMGT000230 [3] 1311558-1311634
IGHDIGHD6-29 IGHD6-29*01 F 14 AG05252 IMGT000144 [1] MAP 1390776-1390849
IGHDIGHD6-29 IGHD6-29*01 F 14 AG05252 IMGT000229 [3] MAP 1390780-1390853 AG05252 IMGT000166 [2] 1321497-1321570
AG05252 IMGT000230 [3] 1321497-1321570
IGHDIGHD7-31 IGHD7-31*01 F 14 AG05252 IMGT000144 [1] MAP 1413109-1413175
IGHDIGHD7-31 IGHD7-31*01 F 14 AG05252 IMGT000229 [3] MAP 1413113-1413179 AG05252 IMGT000166 [2] 1343825-1343891
AG05252 IMGT000230 [3] 1343825-1343891
IMGT notes: ↑
  1. noncanonical 5'D-NONAMER:ggataccaa instead of ggattctgt
  2. noncanonical 5'D-HEPTAMER:catggtg instead of cactgtg
  3. noncanonical 3'D-NONAMER:gaaaaactg instead of tccaaaact
  4. noncanonical 5'D-HEPTAMER:tgctgtg instead of cactgtg
  5. noncanonical 5'D-HEPTAMER:tactgtt instead of cactgtg
  6. noncanonical 5'D-HEPTAMER:ggccgtg instead of cactgtg
  7. noncanonical 3'D-NONAMER:gcggcaacc instead of tccaaaact
  8. noncanonical 5'D-HEPTAMER:ggccatg instead of cactgtg
  9. noncanonical 3'D-NONAMER:caccccaca instead of tccaaaact
IMGT references: ↑
  1. Koren,S. et al., Complete, haplotype-resolved assemblies of non-human primate chromosomes X and Y, Unpublished.
  2. Koren S. et al., Complete, haplotype-resolved assemblies of non-human primate chromosomes X and Y, Unpublished.
  3. Makova K.D. et al., The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes, Unpublished.