Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: A scoring system is employed to indicate the number of IMGT/LIGM-DB reference sequences and other sequences from the literature in which an IG or TR gene allele has been identified and annotated.

A single star ()
indicates that an IG or TR gene allele is annotated in the reference sequence only.
Two stars ()
indicate that an IG or TR gene allele is annotated in its reference sequence and in one sequence from the literature.
Three stars ()
indicate that an IG or TR gene allele is annotated in its reference sequence and in at least two sequences from the literature.
In the Excel file, the stars are represented by the plus symbol (+).
Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of chicken (Gallus gallus) IGLV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)		Secondary
accession
numbers		Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
IGLV1IGLV1-1 IGLV1-1*01 F 15
RTPr
++
 CM000107.5 Red Jungle fowl IMGT000008 MAP 30793-31296 M12317 [5] 1-506
IGLV1IGLV1-1 IGLV1-1*02 F 15
RTPr
++
 M24403 [1,2] (26) 467-970 M34803 [3] 45-327 *
IGLV1IGLV1-2 IGLV1-2*01 P (1) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP <28108-28316 *
IGLV1IGLV1-2 IGLV1-2*02 P (1) 15 M12437 [5] (26) <87-295 *
IGLV1IGLV1-2 IGLV1-2*03 P (1) 15 M15096 [4] (26) <10-218 *
IGLV1IGLV1-3 IGLV1-3*01 P (2) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP complement(27685-27947) *
IGLV1IGLV1-3 IGLV1-3*02 P (3) 15 M12438 [5] (26) 134-395 *
IGLV1IGLV1-3 IGLV1-3*03 P (4) 15 M15097 [4] (26) complement(51-313) *
IGLV1IGLV1-4 IGLV1-4*01 P (5) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP <26973-27148 * M15098 [4] <10-185 *
IGLV1IGLV1-4 IGLV1-4*02 P (5) 15 M12439 [5] (26) <120-295 *
IGLV1IGLV1-5 IGLV1-5*01 P (6) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP complement(25350-25632) *
IGLV1IGLV1-5 IGLV1-5*02 P (7) 15 M15139 [4] (26) complement(17-298) *
IGLV1IGLV1-6 IGLV1-6*01 P (1) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP <24112-24320 *
IGLV1IGLV1-6 IGLV1-6*02 P (8) 15 M15138 [4] (26) <19-227 *
IGLV1IGLV1-7 IGLV1-7*01 P (6) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP 22680-22968 *
IGLV1IGLV1-8 IGLV1-8*01 P (6) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP complement(22133-22421) *
IGLV1IGLV1-8 IGLV1-8*02 P (3) 15 M15137 [4] (26) complement(18-306) *
IGLV1IGLV1-9 IGLV1-9*01 P (6) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP 21134-21431 *
IGLV1IGLV1-9 IGLV1-9*02 P (3) 15 M15140 [4] (26) 30-327 *
IGLV1IGLV1-10 IGLV1-10*01 P (9) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP <20688-20891 *
IGLV1IGLV1-11 IGLV1-11*01 P (6) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP complement(19824-20106) *
IGLV1IGLV1-11 IGLV1-11*02 P (3) 15 M15142 [4] (26) complement(47-329) *
IGLV1IGLV1-12 IGLV1-12*01 P (10) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP 18861-19148 *
IGLV1IGLV1-13 IGLV1-13*01 P (11) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP 18215-18504 *
IGLV1IGLV1-14 IGLV1-14*01 P (6) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP 17544-17826 *
IGLV1IGLV1-14 IGLV1-14*02 P (3) 15 M15145 [4] (26) 30-312 *
IGLV1IGLV1-15 IGLV1-15*01 P (12) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP complement(16405-16690) *
IGLV1IGLV1-15 IGLV1-15*02 P (12) 15 M15146 [4] (26) complement(25-310) *
IGLV1IGLV1-15-1 IGLV1-15-1*01 P (13) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP <16270->16380 * M15147 [4] (26) <22->132 *
IGLV1IGLV1-16 IGLV1-16*01 P (14) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP complement(<15809-15979) *
IGLV1IGLV1-16 IGLV1-16*02 P (15) 15 M15148 [4] (26) complement(<10-180) *
IGLV1IGLV1-17 IGLV1-17*01 P (16) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP <14593-14800 *
IGLV1IGLV1-18 IGLV1-18*01 P (17) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP 14205-14505 *
IGLV1IGLV1-19 IGLV1-19*01 P (6) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP complement(13768-14065) *
IGLV1IGLV1-19 IGLV1-19*02 P (3) 15 M15150 [4] (26) complement(19-316) *
IGLV1IGLV1-20 IGLV1-20*01 P (6) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP 13032-13317 *
IGLV1IGLV1-20 IGLV1-20*02 P (3) 15 M15151 [4] (26) 43-328 *
IGLV1IGLV1-21 IGLV1-21*01 P (18) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP complement(12463-12746) *
IGLV1IGLV1-21-1 IGLV1-21-1*01 P (19) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP 12121->12219 * M15153 [4] (26) 39->137 *
IGLV1IGLV1-21-2 IGLV1-21-2*01 P (20) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP <11432->11536 *
IGLV1IGLV1-21-2 IGLV1-21-2*02 P (20) 15 M15154 [4] (26) <1->105 *
IGLV1IGLV1-22 IGLV1-22*01 P (21) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP 11040-11322 *
IGLV1IGLV1-22 IGLV1-22*02 P (22) 15 M15155 [4] (26) 43-325 *
IGLV1IGLV1-23 IGLV1-23*01 P (23) 15 CM000107.5 Red Jungle fowl IMGT000008 MAP complement(9977-10259) *
IGLV1IGLV1S1 NL IGLV1S1*01 F 15
RTPr
++
 M15095 [4] (26) 177-680
IGLV1IGLV1S2 NL IGLV1S2*01 P (3) 15 M15099 [4] (26) 43-331 *
IGLV1IGLV1S3 NL IGLV1S3*01 P (9) 15 M15141 [4] (26) <22-225 *
IGLV1IGLV1S4 NL IGLV1S4*01 P (24) 15 M15143 [4] (26) 49-336 *
IGLV1IGLV1S5 NL IGLV1S5*01 P (25) 15 M15144 [4] (26) 50-339 *
IGLV1IGLV1S7 NL IGLV1S7*01 P (3) 15 M15149 [4] (26) 25-325 *
IGLV1IGLV1S8 NL IGLV1S8*01 P (3) 15 M15152 [4] (26) complement(47->327) *
IGLV1IGLV1S11 NL IGLV1S11*01 P (23) 15 M15156 [4] (26) complement(19-313) *
IMGT notes: ↑
  1. no L-PART1, no L-PART2, deletions in V-REGION: AA 1 to 26 are missing
  2. no L-PART1, frameshift in V-REGION: deletion of 20 nt in FR2-IMGT, no V-RS
  3. probably no L-PART1 (as the other Gallus gallus pseudogenes), no V-RS
  4. probably no L-PART1 (as the other Gallus gallus pseudogenes), frameshift in V-REGION: deletion of 20 nt in FR2-IMGT, no V-RS
  5. no L-PART1, no L-PART2, deletions in V-REGION: AA 1 to 45A are missing, no V-NONAMER
  6. no L-PART1, no V-RS
  7. probably no L-PART1 (as the other Gallus gallus pseudogenes), frameshift in V-REGION: deletion of 1 nt in FR2-IMGT, no V-RS
  8. no L-PART1, no L-PART2, deletions in V-REGION: AA 1 to 26 are missing, no V-NONAMER
  9. no L-PART1, no L-PART2, deletions in V-REGION: AA 1 to 26 are missing, frameshift in V-REGION: deletion of 1 nt in CDR3-IMGT, no V-RS
  10. no L-PART1, frameshift in V-REGION: deletion of 2 nt in FR1-IMGT
  11. no L-PART1
  12. no V-RS
  13. no L-PART1, no L-PART2, deletion in V-REGION: AA 1 to 26 and 81 to 114 are missing, no V-RS
  14. no L-PART1, deletions in V-REGION: AA 75 to 113 are missing, no V-RS
  15. probably no L-PART1 (as the other Gallus gallus pseudogenes), STOP-CODON in V-REGION: position 69, deletions in V-REGION: AA 75 to 113 are missing, no V-RS
  16. no L-PART1, no L-PART2, deletions in V-REGION: AA 1 to 26 are missing, no V-RS
  17. no L-PART1, frameshift in V-REGION: insertion of 14 nt in FR2-IMGT
  18. no L-PART1, no L-PART2, no V-NONAMER
  19. no L-PART1, deletions in V-REGION: AA 44 to 114 are missing, no V-RS
  20. no L-PART1, no L-PART2, deletions in V-REGION: AA 1 to 23 and 75 to 104 are missing, no V-RS
  21. no L-PART1, STOP-CODON in V-REGION: position 75, no V-RS
  22. probably no L-PART1 (as the other Gallus gallus pseudogenes), STOP-CODON in V-REGION: position 75, no V-RS
  23. no L-PART1, no L-PART2, no V-RS
  24. probably no L-PART1 (as the other Gallus gallus pseudogenes), frameshift in V-REGION: deletion of 2 nt in FR1-IMGT
  25. probably no L-PART1 (as the other Gallus gallus pseudogenes)
  26. Sequence not in locus reference sequence (assembly GRCg6a)
IMGT references: ↑
  1. McCormack W.T. et al., Chicken IgL gene rearrangement involves deletion of a circular episome and addition of single nonrandom nucleotides to both coding segments, Cell, vol. 56, no. 5, 1989, pp. 785-791. DOI: 10.1016/0092-8674(89)90683-1
  2. McCormack W.T. et al., Unpublished.
  3. Parvari R. et al., Somatic diversification of chicken immunoglobulin light chains by point mutations, Proc. Natl. Acad. Sci. U.S.A, vol. 87, no. 8, 1990, pp. 3072-3076. PUBMED: 2109325
  4. Reynaud C. et al., A hyperconversion mechanism generates the chicken light chain preimmune repertoire, Cell, vol. 48, no. 3, 1987, pp. 379-388. DOI: 10.1016/0092-8674(87)90189-9
  5. Reynaud C. et al., A single rearrangement event generates most of the chicken immunoglobulin light chain diversity, Cell, vol. 40, no. 2, 1985, pp. 283-291. DOI: 10.1016/0092-8674(85)90142-4