Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of pig (Sus scrofa) TRGC IMGT group:
IMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		ExonsR T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers		Positions
in the sequence		Secondary
accession
numbers		Clone namesBreedAccession
numbers		Positions
in the sequence
TRGC1 TRGC1*01 F 9 EX1 TJ Tabasco Duroc IMGT000232 MAP 28123-28452
TRGC1 TRGC1*01 F 9 EX2 TJ Tabasco Duroc IMGT000232 MAP 31682-31717
TRGC1 TRGC1*01 F 9 EX3 TJ Tabasco Duroc IMGT000232 MAP 33342-33481
TRGC1 TRGC1*02 F 9 EX1 WZS1 Wuzhishan IMGT000271 [1] MAP 208023-208352
TRGC1 TRGC1*02 F 9 EX2 WZS1 Wuzhishan IMGT000271 [1] MAP 211586-211621
TRGC1 TRGC1*02 F 9 EX3 WZS1 Wuzhishan IMGT000271 [1] MAP 213248-213387
TRGC2 TRGC2*01 F 9 EX1 TJ Tabasco Duroc IMGT000232 MAP 53608-53937 WZS1 Wuzhishan IMGT000271 [1] 233393-233722
TRGC2 TRGC2*01 F 9 EX2A TJ Tabasco Duroc IMGT000232 MAP 57430-57489 WZS1 Wuzhishan IMGT000271 [1] 237222-237281
TRGC2 TRGC2*01 F 9 EX2B TJ Tabasco Duroc IMGT000232 MAP 58319-58366 WZS1 Wuzhishan IMGT000271 [1] 238117-238164
TRGC2 TRGC2*01 F 9 EX2C TJ Tabasco Duroc IMGT000232 MAP 58653-58694 WZS1 Wuzhishan IMGT000271 [1] 238452-238493
TRGC2 TRGC2*01 F 9 EX3 TJ Tabasco Duroc IMGT000232 MAP 60815-60951 WZS1 Wuzhishan IMGT000271 [1] 240616-240752
TRGC3 TRGC3*01 F 9 EX1 WZS1 Wuzhishan IMGT000271 [1] MAP 260948-261277
TRGC3 TRGC3*01 F 9 EX2A WZS1 Wuzhishan IMGT000271 [1] MAP 264246-264305
TRGC3 TRGC3*01 F 9 EX2B WZS1 Wuzhishan IMGT000271 [1] MAP 265120-265167
TRGC3 TRGC3*01 F 9 EX2C WZS1 Wuzhishan IMGT000271 [1] MAP 265441-265482
TRGC3 TRGC3*01 F 9 EX3 WZS1 Wuzhishan IMGT000271 [1] MAP 267604-267740
TRGC4 TRGC4*01 F 9 EX1 WZS1 Wuzhishan IMGT000271 [1] MAP 289646-289975
TRGC4 TRGC4*01 F 9 EX2A WZS1 Wuzhishan IMGT000271 [1] MAP 290855-290914
TRGC4 TRGC4*01 F 9 EX2B WZS1 Wuzhishan IMGT000271 [1] MAP 291463-291510
TRGC4 TRGC4*01 F 9 EX2C WZS1 Wuzhishan IMGT000271 [1] MAP 291798-291845
TRGC4 TRGC4*01 F 9 EX3 WZS1 Wuzhishan IMGT000271 [1] MAP 294185-294321
IMGT references: ↑
  1. Luo Y. et al., Telomere-to-telomere genome assembly of a male pig provides insight into world-wide population structure and selection for body stature, Unpublished.