IMGT Repertoire (IG and TR)


Locus gene order: Naked mole-rat (Heterocephalus glaber) TRA/TRD locus

Naked mole-rat (Heterocephalus glaber) TRA/TRD locus

IMGT gene name Functionality IMGT gene order
IMGT locus ID:Hetgla_TRA/TRD_3
Genome assembly:Naked mole-rat maternal		 IMGT gene orientation in locus Copy Number Variation (CNV)
OR10G3 F 1 opposite
TRAV1 F 2 direct
TRAV4 F 3 direct
TRAV5-1 F 4 direct
TRAV8-1 F 5 direct
TRAV9-1 F 6 direct
TRAV9-2 F 7 direct
TRAV13-1 P 8 direct
TRAV9-3 F 9 direct
TRAV13-2 F 10 direct
TRAV14-1 P 11 direct
TRAV9-4 P 12 direct
TRAVA P 13 direct
TRAVB P 14 direct
TRAV12-2 F 15 direct
TRAV17-1 ORF 16 direct
TRAV19-1 F 17 direct
TRAV18-1 ORF 18 direct
TRAV22-1 F 19 direct
TRDV1-1 P 20 direct
TRAV11-1 F 21 direct
TRAV12-3 F 22 direct
TRAV12-4 F 23 direct
TRAVC P 24 direct
TRAV19-2 P 25 direct
TRAV21 P 26 direct
TRAV22-2 F 27 direct
TRAV23-6 P 28 direct
TRDV1-2 ORF 29 direct
TRAV8-2 F 30 direct
TRAV27 P 31 direct
TRAV29-1 F 32 direct
TRAV34-1 F 33 direct
TRAV35-1 F 34 direct
TRAV22-3 P 35 direct
TRAV23-1 P 36 direct
TRDVA P 37 direct
TRAV9-5 F 38 direct
TRDV1-4 F 39 direct
TRAV5-3 P 40 direct
TRAV43 F 41 direct
TRAVD P 42 direct
TRAV14-2 F 43 direct
TRAV10 P 44 direct
TRAVE P 45 direct
TRAV12-6 F 46 direct
TRDV1-5 F 47 direct
TRAV12-7 F 48 direct
TRAV17-2 F 49 direct
TRAV19-3 P 50 direct
TRAV18-2 P 51 direct
TRAV22-4 F 52 direct
TRAV25-1 ORF 53 direct
TRAV8-3 F 54 direct
TRAV23-2 F 55 direct
TRDV1-6 F 56 direct
TRAV14-3 P 57 direct
TRAV9-6 F 58 direct
TRAV11-2 P 59 direct
TRAV12-8 ORF 60 direct
TRAV23-3 F 61 direct
TRAV9-7 F 62 direct
TRAV13-3 P 63 direct
TRAV14-4 P 64 direct
TRAV9-8 F 65 direct
TRAV12-9 P 66 direct
TRAVF P 67 direct
TRAV22-6 P 68 direct
TRAV23-4 F 69 direct
TRDVB P 70 direct
TRAV25-3 F 71 direct
TRAV8-6 F 72 direct
TRAV28 ORF 73 direct
TRAV29-2 P 74 direct
TRAV30 P 75 direct
TRAV31 P 76 direct
TRAV32 P 77 direct
TRAV33 ORF 78 direct
TRAV34-2 F 79 direct
TRAV35-2 F 80 direct
TRAV36 P 81 direct
TRAV38-2 F 82 direct
TRAV38-5 F 83 direct
TRAV39 P 84 direct
TRAV40 P 85 direct
TRAV41 P 86 direct
TRDV5 F 87 direct
TRAV46 P 88 direct
TRDV4 P 89 direct
TRDV2 P 90 direct
TRDD1 ORF 91 direct
TRDD2 F 92 direct
TRDD3 F 93 direct
TRDJ1 F 94 direct
TRDJ4 ORF 95 direct
TRDJ2 ORF 96 direct
TRDJ3 P 97 direct
TRDC F 98 direct
TRDV3 ORF 99 opposite
TRAJ61 ORF 100 direct
TRAJ60 P 101 direct
TRAJ59 P 102 direct
TRAJ58 F 103 direct
TRAJ57 F 104 direct
TRAJ56 F 105 direct
TRAJ54 F 106 direct
TRAJ53 F 107 direct
TRAJ52 F 108 direct
TRAJ51 ORF 109 direct
TRAJ50 F 110 direct
TRAJ49 F 111 direct
TRAJ48 F 112 direct
TRAJ47 F 113 direct
TRAJ46 P 114 direct
TRAJ45 F 115 direct
TRAJ44 F 116 direct
TRAJ43 F 117 direct
TRAJ42 ORF 118 direct
TRAJ41 F 119 direct
TRAJ40 F 120 direct
TRAJ39 F 121 direct
TRAJ38 ORF 112 direct
TRAJ37 ORF 123 direct
TRAJ36 F 124 direct
TRAJ35 ORF 125 direct
TRAJ34 F 126 direct
TRAJ33 F 127 direct
TRAJ32 F 128 direct
TRAJ31 F 129 direct
TRAJ30 F 130 direct
TRAJ29 F 131 direct
TRAJ28 F 132 direct
TRAJ27 F 133 direct
TRAJ26 F 134 direct
TRAJ25 F 135 direct
TRAJ24 F 136 direct
TRAJ23 ORF 137 direct
TRAJ22 F 138 direct
TRAJ21 ORF 139 direct
TRAJ20 F 140 direct
TRAJ19 P 141 direct
TRAJ18 ORF 142 direct
TRAJ17 F 143 direct
TRAJ16 F 144 direct
TRAJ15 F 145 direct
TRAJ14 F 146 direct
TRAJ13 F 147 direct
TRAJ12 ORF 148 direct
TRAJ11 F 149 direct
TRAJ10 F 150 direct
TRAJ9 F 151 direct
TRAJ8 152 direct
TRAJ7 F 153 direct
TRAJ6 ORF 154 direct
TRAJ5 F 155 direct
TRAJ4 F 156 direct
TRAJ3 ORF 157 direct
TRAJ2 P 158 direct
TRAC F 159 direct
DAD F 160 opposite
IMGT notes:
  1. (1) TRAV12-1, TRDV1-3, TRAV5-2, TRAV22-5, TRAV23-5, TRDVC, TRAV25-2, TRAV8-4, TRAV8-5, TRAV8-7, TRAV38-1, TRAV38S1, TRAV38S2, TRAV35S2, TRAV34S1 and TRAV35S3 genes are not present here, as they are only found in the scaffold assembly (IMGT000071).
Created:
30/06/2021
Last updated:
24/01/2024
Authors:
Maria Georga, Ariadni Papadaki