IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

Ma's night monkey (Aotus nancymaae) TRAV subgroup names are according to the human TRAV subgroup names (Germline gene table: Human TRAV).

IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences							IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers			Strain	Clone names	Accession numbers	Positions in the sequence
TRAV5	TRAV5	TRAV5*01	(F)		+	+						AF027543	[1]	#c					AF027542	[1]	(1)	#c
																			AF027544	[1]		#c
																			AF027545	[1]		#c
																			AF027553	[1]		#c
																			AF027563	[1]		#c
																			AF027564	[1]		#c
																			AF027566	[1]		#c
		TRAV5*02	(F)		+	+						AF027547	[1]	#c					AF027551	[1]		#c
		TRAV5*02	(F)		+	+						AF027547	[1]	#c					AF027552	[1]		#c
		TRAV5*03	(F)		+	+						AF027549	[1]	#c
		TRAV5*04	(F)		+	+						AF027554	[1]	#c
TRAV9	TRAV9S1	TRAV9S1*01	(F)		+	+						AF027557	[1]	#c
TRAV12	TRAV12S1	TRAV12S1*01	(F)		+	+						AF027561	[1]	#c
	TRAV12S2	TRAV12S2*01	(F)		+	+						AF027546	[1]	#c					AF027559	[1]		#c
	TRAV12S2	TRAV12S2*02	(F)		+	+						AF027562	[1]	#c
TRAV13	TRAV13S1	TRAV13S1*01	(F)		+	+						AF027560	[1]	#c					AF027567	[1]		#c
		TRAV13S1*02	(F)		+	+						AF027548	[1]	#c
		TRAV13S1*03	(F)		+	+						AF027565	[1]	#c
		TRAV13S1*04	(F)		+	+						AF027569	[1]	#c
TRAV17	TRAV17	TRAV17*01	(F)		+	+						AF027556	[1]	#c					AF027568	[1]		#c
TRAV19	TRAV19	TRAV19*01	(F)		+	+						AF027550	[1]	#c
TRAV21	TRAV21	TRAV21*01	(F)		+	+						AF027541	[1]	#c					AF027555	[1]		#c
TRAV29	TRAV29	TRAV29*01	(F)		+	+						AF027558	[1]	#c

#c: rearranged cDNA.

IMGT notes:

(1) Pseudogene because FR1-IMGT and CDR1-IMGT are duplicated, truncated FR2-IMGT.

IMGT references:

[1] Favre N. et al., Immunogenetics, 48, 253-259 (1998). PMID:9716644

See also (IMGT Scientific chart):

Created:: 26/03/2003
Last updated:: 22/09/2023
Authors:: Géraldine Folch

IMGT Repertoire (IG and TR)

Gene table: Ma's night monkey (Aotus nancymaae) TRAV