IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct	Chromosomal localization	R	T	Pr	IMGT/LIGM-DB locus reference sequences							IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct	Chromosomal localization	R	T	Pr	Breed	Clone names	Accession numbers	Positions in the sequence (D-GENE-UNIT)	Secondary accession numbers			Breed	Clone names	Accession numbers	Positions in the sequence (D-GENE-UNIT)
IGHD1	IGHD1	IGHD1*01	F		6	+	+					GU129139	[1]	MAP	757536..757604
	IGHD1D	IGHD1D*01	F		3	+	+					GU129140	[1]	MAP	956096..956164
	IGHD1T2	IGHD1T2*01	F		6	+	+					GU129139	[1]	MAP	333099..333187
	IGHD1T2D	IGHD1T2D*01	F		3	+	+					GU129140	[1]	MAP	528703..528771
	IGHD1T3D	IGHD1T3D*01	F		3	+	+					GU129140	[1]	MAP	833042..833109
	IGHD1T4	IGHD1T4*01	F		6							GU129139	[1]	MAP	complement(661333..661421)
	IGHD1T5	IGHD1T5*01	F		6	+	+					GU129139	[1]	MAP	710801..710869
IGHD2	IGHD2	IGHD2*01	F		6	+	+					GU129139	[1]	MAP	758408..758476
	IGHD2D	IGHD2D*01	F		3							GU129140	[1]	MAP	956554..956622
	IGHD2T2	IGHD2T2*01	F		6	+	+					GU129139	[1]	MAP	333562..333633
	IGHD2T2D	IGHD2T2D*01	F		3	+	+					GU129140	[1]	MAP	529104..529174
	IGHD2T3D	IGHD2T3D*01	F		3							GU129140	[1]	MAP	832409..832477
	IGHD2T4	IGHD2T4*01	F		6							GU129139	[1]	MAP	complement(660887..660958)
IGHD3	IGHD3	IGHD3*01	F		6							GU129139	[1]	MAP	758849..758916
	IGHD3D	IGHD3D*01	F		3							GU129140	[1]	MAP	956997..957064
	IGHD3T3D	IGHD3T3D*01	F		3							GU129140	[1]	MAP	831958..832023
	IGHD3T4	IGHD3T4*01	F		6	+	+					GU129139	[1]	MAP	complement(647978..648046)
IGHD4	IGHD4	IGHD4*01	F		6	+	+					GU129139	[1]	MAP	759635..759702
	IGHD4D	IGHD4D*01	F		3							GU129140	[1]	MAP	957786..957853
	IGHD4T4	IGHD4T4*01	F		6	+	+					GU129139	[1]	MAP	complement(647571..647639)
IGHD5	IGHD5	IGHD5*01	F		6	+	+					GU129139	[1]	MAP	760074..760142
	IGHD5D	IGHD5D*01	F		3	+	+					GU129140	[1]	MAP	958189..958256
	IGHD5T4	IGHD5T4*01	F		6	+	+					GU129139	[1]	MAP	complement(645722..645789)
IGHD6	IGHD6	IGHD6*01	F		6	+	+					GU129139	[1]	MAP	760688..760755
IGHD6	IGHD6D	IGHD6D*01	F		3							GU129140	[1]	MAP	958724..958791
IGHD7	IGHD7	IGHD7*01	F		6							GU129139	[1]	MAP	779189..779256
IGHD8	IGHD8	IGHD8*01	F		6	+	+					GU129139	[1]	MAP	779950..780017
IGHD9	IGHD9	IGHD9*01	F		6							GU129139	[1]	MAP	780469..780536

MAP: Mapped reference sequences.

IMGT references:

[1] Yasuike M. et al. BMC Genomics 11:486-486 (2010). doi: 10.1186/1471-2164-11-486. PMID:20813058

More information:

See also (IMGT Scientific chart):

Created:: 10/01/2019
Last updated:: 22/09/2023
Authors:: Saida Hadi-Saljoqi

IMGT Repertoire (IG and TR)

Gene table: Atlantic salmon (Salmon salar) IGHD