IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization	R	T	Pr	IMGT/LIGM-DB locus reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization	R	T	Pr	Breed	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)	Secondary accession numbers	Breed		Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)
	IGHJ	IGHJ*01	F		31				Red Jungle fowl	CM003638.2		IMGT000014	MAP	106133..106228		Red Jungle fowl	NT_467189		5032..5127
	IGHJ	IGHJ*01	F		31				Red Jungle fowl	CM003638.2		IMGT000014	MAP	106133..106228			M30320	[1]	78..173

MAP: Mapped reference sequences.

IMGT references:

[1] Reynaud C.A. et al., Cell 59(1):171-183 (1989). PMID:2507167

More information:

See also (IMGT Scientific chart):

Created:: 24/04/2018
Last updated:: 22/09/2023
Authors:: Perrine Pégorier

IMGT Repertoire (IG and TR)

Gene table: chicken (Gallus gallus) IGHJ