IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

The Goat (Capra hircus) TRAV genes have a temporary designation based on the IMGT gene name nomenclature rules for the unmapped genes, the incomplete loci, or the cDNAs in the absence of germline genes.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct		R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences							IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct		R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers			Strain	Clone names	Accession numbers	Positions in the sequence
TRAV1	TRAV1S1	TRAV1S1*01	(F)			+	+						AF318539	[1]	#c
	TRAV1S2	TRAV1S2*01	(F)			+	+						AF318517	[1]	#c
	TRAV1S3	TRAV1S3*01	(F)			+	+						AF318520	[1]	#c
	TRAV1S4	TRAV1S4*01	(F)			+	+						AF318532	[1]	#c
	TRAV1S5	TRAV1S5*01	(F)			+	+						AF318545	[1]	#c
	TRAV1S6	TRAV1S6*01	(F)			+	+						AF318535	[1]	#c
	TRAV1S7	TRAV1S7*01	(F)			+	+						AF318530	[1]	#c
TRAV2	TRAV2S1	TRAV2S1*01	(F)			+	+						AF318510	[1]	#c
	TRAV2S2	TRAV2S2*01	(F)			+	+						AF318540	[1]	#c
	TRAV2S3	TRAV2S3*01	(F)			+	+						AF318521	[1]	#c
TRAV3	TRAV3S1	TRAV3S1*01	(F)			+	+						AF318526	[1]	#c
TRAV4	TRAV4S1	TRAV4S1*01	(F)			+	+						AF318518	[1]	#c
TRAV4	TRAV4S2	TRAV4S2*01	(F)			+	+						AF318544	[1]	#c
TRAV5	TRAV5S1	TRAV5S1*01	(F)			+	+						AF318519	[1]	#c
	TRAV5S2	TRAV5S2*01	(F)			+	+						AF318538	[1]	#c
	TRAV5S3	TRAV5S3*01	(F)			+	+						AF318509	[1]	#c
	TRAV5S4	TRAV5S4*01	(F)			+	+						AF318514	[1]	#c
TRAV6	TRAV6S1	TRAV6S1*01	(F)			+	+						AF318527	[1]	#c
TRAV6	TRAV6S2	TRAV6S2*01	(F)			+	+						AF318534	[1]	#c
TRAV7	TRAV7S1	TRAV7S1*01	(F)			+	+						AF318528	[1]	#c
TRAV8	TRAV8S1	TRAV8S1*01	(F)			+	+						AF318531	[1]	#c
TRAV8	TRAV8S2	TRAV8S2*01	(F)			+	+						AF318537	[1]	#c
TRAV9	TRAV9S1	TRAV9S1*01	(F)			+	+						AF318515	[1]	#c
TRAV10	TRAV10S1	TRAV10S1*01	(F)			+	+						AF318543	[1]	#c
TRAV10	TRAV10S2	TRAV10S2*01	(F)			+	+						AF318529	[1]	#c
TRAV11	TRAV11S1	TRAV11S1*01	(F)			+	+						AF318524	[1]	#c
TRAV12	TRAV12S1	TRAV12S1*01	(F)			+	+						AF318547	[1]	#c
TRAV13	TRAV13S1	TRAV13S1*01	(F)			+	+						AF318513	[1]	#c
TRAV14	TRAV14S1	TRAV14S1*01	(F)			+	+						AF318546	[1]	#c
TRAV15	TRAV15S1	TRAV15S1*01	(F)			+	+						AF318523	[1]	#c
TRAV16	TRAV16S1	TRAV16S1*01	(F)			+	+						AF318522	[1]	#c
	TRAV16S2	TRAV16S2*01	(F)			+	+						AF318533	[1]	#c
	TRAV16S3	TRAV16S3*01	(F)			+	+						AF318541	[1]	#c
TRAV17	TRAV17S1	TRAV17S1*01	(F)			+	+						AF318542	[1]	#c
	TRAV17S2	TRAV17S2*01	(P)	(1)		+	+						AF318525	[1]	#c
	TRAV17S3	TRAV17S3*01	(F)			+	+						AF318516	[1]	#c
	TRAV17S4	TRAV17S4*01	(F)			+	+						AF318536	[1]	#c
TRAV18	TRAV18S1	TRAV18S1*01	(F)			+	+						AF318512	[1]	#c
TRAV19	TRAV19S1	TRAV19S1*01	(F)			+	+						AF318511	[1]	#c

#c: rearranged cDNA.

IMGT notes:

(1) Pseudogene because truncated V-GENE.

IMGT references:

[1] Fluri A. et al., Unpublished.

See also (IMGT Scientific chart):

Created:: 26/09/2002
Last updated:: 22/09/2023
Authors:: Géraldine Folch

IMGT Repertoire (IG and TR)

Gene table: goat (Capra hircus) TRAV