IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers	Strain			Clone names	Accession numbers	Positions in the sequence
	IGHD1	IGHD1*01	F							1315		X13447	[1]
	IGHD2	IGHD2*01	F							1315		X13447	[1]
	IGHD3	IGHD3*01	(F)		+	+				F101		X13449	[1]	~VDJ
	IGHD4	IGHD4*01	F		+	+				1403		Z11777	[2]						Z11780	[2]		#c
																		HXIA	X03750	[3]
																		1403	X15170	[1]
	IGHD5	IGHD5*01	F		+	+				1403		Z11777	[2]						Z11780	[2]		#c
	IGHD5	IGHD5*01	F		+	+				1403		Z11777	[2]					1403	X15173	[1]	(1)
	IGHD6	IGHD6*01	F							33141		Z11778	[2]
	IGHD7	IGHD7*01	F							33141		Z11779	[2]
	IGHD8	IGHD8*01	F		+	+				1113		Z11776	[2]						Z11790	[2]		#c
	IGHD8	IGHD8*01	F		+	+				1113		Z11776	[2]					1113	X15172	[1]
	IGHD9	IGHD9*01	F		+	+				1113		Z11776	[2]						Z11790	[2]		#c
	IGHD9	IGHD9*01	F		+	+				1113		Z11776	[2]					1113	X15172	[1]
	IGHD10	IGHD10*01	(F)		+	+				1320		X13448	[1]	~VDJ
	IGHD11	IGHD11*01	F							2807		X15171	[1]
	IGHD12	IGHD12*01	F							2807		X15174	[1]
	IGHD13	IGHD13*01	(F)		+	+				12271		Z11781	[2]	#c
	IGHD14	IGHD14*01	(F)		+	+				12272		Z11782	[2]	#c
	IGHD15	IGHD15*01	(F)		+	+				12214		Z11783	[2]	#c
	IGHD16	IGHD16*01	(F)		+	+				12241		Z11784	[2]	#c
	IGHD17	IGHD17*01	(F)		+	+				12221		Z11785	[2]	#c
	IGHD18	IGHD18*01	(F)		+	+				12273		Z11786	[2]	#c
	IGHD19	IGHD19*01	(F)		+	+				12251		Z11787	[2]	#c
	IGHD20	IGHD20*01	(F)		+	+				HN13		Z11788	[2]	#c
	IGHD21	IGHD21*01	(F)		+	+						Z11789	[2]	#c
	IGHD22	IGHD22*01	(F)		+	+				HN21		Z11791	[2]	#c
	IGHD23	IGHD23*01	(F)		+	+				HN72		Z11792	[2]	#c
	IGHD24	IGHD24*01	(F)		+	+				HC-3		X03748	[3]	#c

#c: rearranged cDNA.
~VDJ: VDJ genomic DNA rearranged in the cassette.

IMGT notes:

(1) In this sequence, only one nucleotide is different from the reference sequence.

IMGT references:

[1] Kokubu F. et al., EMBO J., 7, 3413-3422 (1988). PMID:3145194
[2] Hinds-Frey K.R. et al., J. Exp. Med., 178, 815-824 (1993). PMID:8350055
[3] Hinds K.R. et al., Nature, 320, 546-549 (1986). PMID:3083268

See also (IMGT Scientific chart):

Created:: 31/01/2002
Last updated:: 22/09/2023
Authors:: Dominique Scaviner

IMGT Repertoire (IG and TR)

Gene table: horn shark (Heterodontus francisci) IGHD