IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences								IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization	T	Pr	Positions in the locus	Strain	Clone names	Exons	Accession numbers	Positions in the sequence		Secondary accession numbers		Strain	Clone names	Accession numbers		Positions in the sequence
	TRDC	TRDC*01	F	14 (19.7 cM)					BALB/c	Ex1	EX1		M23381	[1]			Std:ddY			X17180	[2]	(1)
																	B10.D2-H2^dm1	(3)		M64239	[3]
																	C57BL/6J			IMGT000082	[4]		1724884..1725162
																	129/SvJ			AE007512	[5]		1580287-1581769
										Ex2	EX2		L36133	[1]			B10.D2-H2^dm1	(3)		M64239	[3]
																	C57BL/6J			IMGT000082	[4]		1725804..1725869
																	129/SvJ			AE007512	[5]		1581227-1581292
										Ex3	EX3		L36134	[1]			B10.D2-H2^dm1	(3)		M64239	[3]
																	C57BL/6J			IMGT000082	[4]		1726236..1726352
																	129/SvJ			AE007512	[5]		1581653-1581769
										Ex4	EX4UTR	(2)	L36135	[1]			B10.D2-H2^dm1	(3)		M64239	[3]
																	C57BL/6J			IMGT000082	[4]		1727499..1728141
																	129/SvJ			AE007512	[5]		1592342-1592441

IMGT notes:

(1) EX1 is partial in 3'.
(2) Since EX4 is untranslated, nucleotide differences observed in EX4 are not taken into account for the description of alleles.
(3) B10.D2-H2^dm1 is a congenic strain, B10 is the abbreviated symbol of C57BL/10 and D2 the abbreviated symbol of DBA/2J.

IMGT references:

[1] Iwashima M. et al., Proc. Natl. Acad. Sci. USA., 85, 8161-8165 (1988). PMID:3263646
[2] Toda M. et al., J. Mol. Biol., 202, 219-231 (1988). PMID:3172216
[3] Wilson R.K. et al., Genomics, 13, 1198-1208 (1992). PMID:1505953
[4] Deanna C. et al, PLoS Biol., (9)7 (2011). PMID:21750661
[5] Lee I.Y. et al., Unpublished (1998).

More information:

See also (IMGT Scientific chart):

Created:: 15/02/2000
Last updated:: 22/09/2023
Authors:: Nathalie Bosc and Guilhem Zeitoun

IMGT Repertoire (IG and TR)

Gene table: house mouse (Mus musculus) TRDC