Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Isolate Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Isolate Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRAJ2 TRAJ2 TRAJ2*01 P (1) MEF-2018 RPGA01000024.1 IMGT000071 1745588..1745681
TRAJ3 TRAJ3 TRAJ3*01 ORF (2) MEF-2018 RPGA01000024.1 IMGT000071 1745055..1745144
TRAJ4 TRAJ4 TRAJ4*01 F MEF-2018 RPGA01000024.1 IMGT000071 1744124..1744214
TRAJ5 TRAJ5 TRAJ5*01 F MEF-2018 RPGA01000024.1 IMGT000071 1740723..1740810
TRAJ6 TRAJ6 TRAJ6*01 ORF (3) MEF-2018 RPGA01000024.1 IMGT000071 1739728..1739817
TRAJ7 TRAJ7 TRAJ7*01 F MEF-2018 RPGA01000024.1 IMGT000071 1738383..1738469
TRAJ8 TRAJ8 TRAJ8*01 F MEF-2018 RPGA01000024.1 IMGT000071 1736810..1736897
TRAJ9 TRAJ9 TRAJ9*01 F MEF-2018 RPGA01000024.1 IMGT000071 1736225..1736313
TRAJ10 TRAJ10 TRAJ10*01 F MEF-2018 RPGA01000024.1 IMGT000071 1734638..1734727
TRAJ11 TRAJ11 TRAJ11*01 F MEF-2018 RPGA01000024.1 IMGT000071 1733532..1733619
TRAJ12 TRAJ12 TRAJ12*01 ORF (3) MEF-2018 RPGA01000024.1 IMGT000071 1732970..1733057
TRAJ13 TRAJ13 TRAJ13*01 F MEF-2018 RPGA01000024.1 IMGT000071 1732131..1732221
TRAJ14 TRAJ14 TRAJ14*01 F MEF-2018 RPGA01000024.1 IMGT000071 1731243..1731322
TRAJ15 TRAJ15 TRAJ15*01 F MEF-2018 RPGA01000024.1 IMGT000071 1730471..1730558
TRAJ16 TRAJ16 TRAJ16*01 F MEF-2018 RPGA01000024.1 IMGT000071 1729485..1729572
TRAJ17 TRAJ17 TRAJ17*01 F MEF-2018 RPGA01000024.1 IMGT000071 1728125..1728215
TRAJ18 TRAJ18 TRAJ18*01 ORF (3) MEF-2018 RPGA01000024.1 IMGT000071 1727007..1727100
TRAJ19 TRAJ19 TRAJ19*01 P (4) MEF-2018 RPGA01000024.1 IMGT000071 1726624..1726706
TRAJ20 TRAJ20 TRAJ20*01 F MEF-2018 RPGA01000024.1 IMGT000071 1725676..1725760
TRAJ21 TRAJ21 TRAJ21*01 ORF (3) MEF-2018 RPGA01000024.1 IMGT000071 1724942..1725024
TRAJ22 TRAJ22 TRAJ22*01 F MEF-2018 RPGA01000024.1 IMGT000071 1723392..1723482
TRAJ23 TRAJ23 TRAJ23*01 ORF (3) MEF-2018 RPGA01000024.1 IMGT000071 1721970..1722059
TRAJ24 TRAJ24 TRAJ24*01 F MEF-2018 RPGA01000024.1 IMGT000071 1721513..1721603
TRAJ25 TRAJ25 TRAJ25*01 F MEF-2018 RPGA01000024.1 IMGT000071 1720656..1720743
TRAJ26 TRAJ26 TRAJ26*01 F MEF-2018 RPGA01000024.1 IMGT000071 1720290..1720377
TRAJ27 TRAJ27 TRAJ27*01 F MEF-2018 RPGA01000024.1 IMGT000071 1718150..1718236
TRAJ28 TRAJ28 TRAJ28*01 F MEF-2018 RPGA01000024.1 IMGT000071 1717501..1717594
TRAJ29 TRAJ29 TRAJ29*01 F MEF-2018 RPGA01000024.1 IMGT000071 1716047..1716134
TRAJ30 TRAJ30 TRAJ30*01 F MEF-2018 RPGA01000024.1 IMGT000071 1714969..1715055
TRAJ31 TRAJ31 TRAJ31*01 F MEF-2018 RPGA01000024.1 IMGT000071 1713103..1713187
TRAJ32 TRAJ32 TRAJ32*01 F MEF-2018 RPGA01000024.1 IMGT000071 1711522..1711615
TRAJ33 TRAJ33 TRAJ33*01 F MEF-2018 RPGA01000024.1 IMGT000071 1710796..1710880
TRAJ34 TRAJ34 TRAJ34*01 F MEF-2018 RPGA01000024.1 IMGT000071 1710108..1710193
TRAJ35 TRAJ35 TRAJ35*01 ORF (9) MEF-2018 RPGA01000024.1 IMGT000071 1709105..1709195
TRAJ36 TRAJ36 TRAJ36*01 F MEF-2018 RPGA01000024.1 IMGT000071 1707606..1707695
TRAJ37 TRAJ37 TRAJ37*01 ORF (5) MEF-2018 RPGA01000024.1 IMGT000071 1706807..1706894
TRAJ38 TRAJ38 TRAJ38*01 ORF (3) MEF-2018 RPGA01000024.1 IMGT000071 1705184..1705273
TRAJ39 TRAJ39 TRAJ39*01 F MEF-2018 RPGA01000024.1 IMGT000071 1704555..1704645
TRAJ40 TRAJ40 TRAJ40*01 F MEF-2018 RPGA01000024.1 IMGT000071 1702761..1702848
TRAJ41 TRAJ41 TRAJ41*01 F MEF-2018 RPGA01000024.1 IMGT000071 1701054..1701142
TRAJ42 TRAJ42 TRAJ42*01 ORF (5) MEF-2018 RPGA01000024.1 IMGT000071 1700514..1700605
TRAJ43 TRAJ43 TRAJ43*01 F MEF-2018 RPGA01000024.1 IMGT000071 1699711..1699795
TRAJ44 TRAJ44 TRAJ44*01 F MEF-2018 RPGA01000024.1 IMGT000071 1698644..1698734
TRAJ45 TRAJ45 TRAJ45*01 F MEF-2018 RPGA01000024.1 IMGT000071 1697830..1697920
TRAJ46 TRAJ46 TRAJ46*01 P (1) MEF-2018 RPGA01000024.1 IMGT000071 1697311..1697399
TRAJ47 TRAJ47 TRAJ47*01 F MEF-2018 RPGA01000024.1 IMGT000071 1696768..1696852
TRAJ48 TRAJ48 TRAJ48*01 F MEF-2018 RPGA01000024.1 IMGT000071 1694599..1694687
TRAJ49 TRAJ49 TRAJ49*01 F MEF-2018 RPGA01000024.1 IMGT000071 1693840..1693923
TRAJ50 TRAJ50 TRAJ50*01 F MEF-2018 RPGA01000024.1 IMGT000071 1692956..1693043
TRAJ51 TRAJ51 TRAJ51*01 ORF (6) MEF-2018 RPGA01000024.1 IMGT000071 1691581..1691674
TRAJ52 TRAJ52 TRAJ52*01 F MEF-2018 RPGA01000024.1 IMGT000071 1690638..1690734
TRAJ53 TRAJ53 TRAJ53*01 F MEF-2018 RPGA01000024.1 IMGT000071 1687357..1687450
TRAJ54 TRAJ54 TRAJ54*01 F MEF-2018 RPGA01000024.1 IMGT000071 1686691..1686777
TRAJ56 TRAJ56 TRAJ56*01 F MEF-2018 RPGA01000024.1 IMGT000071 1683958..1684047
TRAJ57 TRAJ57 TRAJ57*01 F MEF-2018 RPGA01000024.1 IMGT000071 1683269..1683358
TRAJ58 TRAJ58 TRAJ58*01 F MEF-2018 RPGA01000024.1 IMGT000071 1682081..1682171
TRAJ59 TRAJ59 TRAJ59*01 P (7) MEF-2018 RPGA01000024.1 IMGT000071 1680956..1681042
TRAJ60 TRAJ60 TRAJ60*01 P (7) MEF-2018 RPGA01000024.1 IMGT000071 1680710..1680794
TRAJ61 TRAJ61 TRAJ61*01 ORF (8) MEF-2018 RPGA01000024.1 IMGT000071 1679703..1679790

Provisional nomenclature (scaffolds only, no chromosome assembly).

IMGT notes:
  1. (1) frameshift in J-REGION
  2. (2) noncanonical J-NONAMER, noncanonical J-HEPTAMER
  3. (3) noncanonical J-NONAMER
  4. (4) no V-HEPTAMER
  5. (5) noncanonical J-HEPTAMER
  6. (6) noncanonical J-HEPTAMER, noncanonical J-NONAMER, unexpected J-SPACER length, noncanonical J-MOTIF, noncanonical DONOR-SPLICE
  7. (7) STOP-CODON in J-REGION, frameshift in J-REGION
  8. (8) noncanonical DONOR-SPLICE, noncanonical J-MOTIF, noncanonical J-HEPTAMER
  9. (9) noncanonical J-MOTIF
Created:
07/07/2021
Last updated:
22/09/2023
Authors:
Maria Georga