IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

**Provisional nomenclature (scaffolds only, no chromosome assembly).**
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	IMGT/LIGM-DB locus reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	Isolate	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)	Secondary accession numbers	Isolate	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)
	TRBJ1-1	TRBJ1-1*01	ORF	(1)						MEF-2018	RPGA01000024.1		IMGT000070	325064..325139
	TRBJ1-2	TRBJ1-2*01	F							MEF-2018	RPGA01000024.1		IMGT000070	325201..325276
	TRBJ1-3	TRBJ1-3*01	F							MEF-2018	RPGA01000024.1		IMGT000070	325769..325846
	TRBJ1-5	TRBJ1-5*01	ORF	(1)						MEF-2018	RPGA01000024.1		IMGT000070	326485..326560
	TRBJ1-6	TRBJ1-6*01	F							MEF-2018	RPGA01000024.1		IMGT000070	326952..327032
	TRBJ2-1	TRBJ2-1*01	ORF	(2)						MEF-2018	RPGA01000024.1		IMGT000070	333829..333906
	TRBJ2-2	TRBJ2-2*01	F							MEF-2018	RPGA01000024.1		IMGT000070	334022..334100
	TRBJ2-3	TRBJ2-3*01	ORF	(3)						MEF-2018	RPGA01000024.1		IMGT000070	334298..334374
	TRBJ2-4	TRBJ2-4*01	F							MEF-2018	RPGA01000024.1		IMGT000070	334455..334531
	TRBJ2-5	TRBJ2-5*01	F							MEF-2018	RPGA01000024.1		IMGT000070	334551..334627
	TRBJ2-6	TRBJ2-6*01	F							MEF-2018	RPGA01000024.1		IMGT000070	334674..334754
	TRBJ2-7	TRBJ2-7*01	ORF	(1)						MEF-2018	RPGA01000024.1		IMGT000070	334806..334880

IMGT notes:

(1) noncanonical J-NONAMER.
(2) noncanonical J-NONAMER, noncanonical J-HEPTAMER.
(3) noncanonical J-HEPTAMER.

More information:

See also (IMGT Scientific chart):

Created:: 20/05/2021
Last updated:: 22/09/2023
Authors:: Maria Georga

IMGT Repertoire (IG and TR)

Gene table: Naked mole-rat (Heterocephalus glaber) TRB