IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers	Strain			Clone names	Accession numbers	Positions in the sequence
	IGIJ1S1	IGIJ1S1*01	(F)		+	+				C11		U15014	[1]	#c
	IGIJ1S2	IGIJ1S2*01	(F)		+	+				C14		U15141	[1]	#c
	IGIJ1S3	IGIJ1S3*01	(F)		+	+				C18		U15142	[1]	#c
	IGIJ1S4	IGIJ1S4*01	(F)		+	+				B11A		U15143	[1]	#c
	IGIJ1S5	IGIJ1S5*01	(F)		+	+				C111		U15144	[1]	#c
	IGIJ1S6	IGIJ1S6*01	(F)		+	+				C12		U15145	[1]	#c

#c: rearranged cDNA.

IMGT references:

[1] Barre S. et al., Nat. Struct. Biol., 1, 915-920 (1994). PMID:7773781

See also (IMGT Scientific chart):

Created:: 15/09/2003
Last updated:: 22/09/2023
Authors:: Dominique Scaviner

IMGT Repertoire (IG and TR)

Gene table: nurse shark (Ginglymostoma cirratum) IGIJ