IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	IMGT/LIGM-DB locus reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	Breed	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)	Secondary accession numbers	Breed			Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)
	TRBJ1-1	TRBJ1-1*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	356761..356836
	TRBJ1-2	TRBJ1-2*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	356896..356967
	TRBJ1-3	TRBJ1-3*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	357177..357254
	TRBJ1-4	TRBJ1-4*01	P	(1)		18				Duroc	CM000829.5		IMGT000039	[1]	MAP	357362..357444
	TRBJ1-5	TRBJ1-5*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	357849..357927
	TRBJ1-6	TRBJ1-6*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	358091..358168
	TRBJ1-7	TRBJ1-7*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	358547..358627
	TRBJ2-1	TRBJ2-1*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	377829..377905
	TRBJ2-2	TRBJ2-2*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	378029..378107
	TRBJ2-3	TRBJ2-3*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	378252..378327
	TRBJ2-4	TRBJ2-4*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	378366..378441
	TRBJ2-5	TRBJ2-5*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	378464..378544
	TRBJ2-6	TRBJ2-6*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	378690..378764
	TRBJ3-1	TRBJ3-1*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	367514..367588
	TRBJ3-2	TRBJ3-2*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	367709..367785
	TRBJ3-3	TRBJ3-3*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	367915..367991
	TRBJ3-4	TRBJ3-4*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	368065..368141
	TRBJ3-5	TRBJ3-5*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	368185..368260
	TRBJ3-6	TRBJ3-6*01	P	(1)		18				Duroc	CM000829.5		IMGT000039	[1]	MAP	368283..368362
	TRBJ3-7	TRBJ3-7*01	F			18				Duroc	CM000829.5		IMGT000039	[1]	MAP	368508..368582

MAP: Mapped reference sequences.

IMGT notes:

(1) Frameshift in J-REGION

IMGT references:

[1] Massari S. et al., Front. Immunol. (2018).

More information:

See also (IMGT Scientific chart):

Created:: 06/02/2019
Last updated:: 22/09/2023
Authors:: Imène Chentli

IMGT Repertoire (IG and TR)

Gene table: pig (Sus scrofa) TRBJ