IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

See Correspondence between nomenclatures: Teleostei IGIC.
Present data do not permit to determine if the sequence comes from different genes, or from different alleles of the same genes.

IMGT gene name	IMGT allele name	Fct	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	T	Pr	Positions in the locus	Strain	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers	Strain				Clone names	Accession numbers	Positions in the sequence
	IGIC1S1	IGIC1S1*01	F							IGIC1E2		AJ251651	[3]
	IGIC1S2	IGIC1S2*01	F							rtSg 9		X68522	[1]		c(st)
	IGIC1S3	IGIC1S3*01	F							rtSg 4		X68520	[1]	(1)	c(st)
	IGIC1S4	IGIC1S4*01	(F)							rtSg E		X65260	[1]		c
	IGIC1S5	IGIC1S5*01	(F)							rtSg 10		X68517	[1]		c
	IGIC1S6	IGIC1S6*01	(F)							rtSg 3		X68519	[1]		c
	IGIC1S7	IGIC1S7*01	(F)							rtSg 6		X68521	[1]		c
	IGIC1S8	IGIC1S8*01	(F)							rtSg 2		X68518	[1]	(2)	c
	IGIC2S1	IGIC2S1*01	F							IGIC1C31-2		AJ251648	[3]
	IGIC2S2	IGIC2S2*01	F							IGIC2C31-2		AJ251648	[3]	(3)
	IGIC2S3	IGIC2S3*01	(F)							VL2a		U69987	[2]		c

c: cDNA sequence.
(st): sterile transcript.

IMGT notes:

(1) Partial C-REGION: 117 nucleotides are missing in 3'.
(2) Partial C-REGION: 55 nucleotides are missing in 5'.
(3) Partial C-REGION: 45 nucleotides are missing in 3'.

IMGT references:

[1] Daggfeldt A. et al., Immunogenetics, 38, 199-209 (1993). PMID:8505063
[2] Partula S. et al., Immunogenetics, 45, 44-51 (1996). PMID:8881036
[3] Timmusk S. et al., Immunogenetics, 51, 905-914 (2000). PMID:11003384

See also (IMGT Scientific chart):

Created:: 16/04/2003
Last updated:: 22/09/2023
Authors:: Sylvaine Artero, Nathalie Bosc

IMGT Repertoire (IG and TR)

Gene table: rainbow trout (Oncorhynchus mykiss) IGIC