IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		T	Pr	IMGT/LIGM-DB locus reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		T	Pr	Isolate	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers	Isolate		Clone names	Accession numbers	Positions in the sequence
	TRBC1	TRBC1*01	F				3	+	+	17573	CM000289.1	EX1	NW_001114291	[1]	783091..783477		17573	CM002984.2	IMGT000012	703910..704296
												EX2	NW_001114291	[1]	783916..783933		17573	CM002984.2	IMGT000012	704735..704752
												EX3	NW_001114291	[1]	784116..784222		17573	CM002984.2	IMGT000012	704931..705037
												EX4	NW_001114291	[1]	784552..784569		17573	CM002984.2	IMGT000012	705367..705384
		TRBC1*02	F				3			AG07107	CM014338.1	EX1	IMGT000073		704350..704736
												EX2	IMGT000073		705175..705192
												EX3	IMGT000073		705366..705472
												EX4	IMGT000073		705802..705819
	TRBC2	TRBC2*01	F				3	+	+	17573	CM002984.2	EX1	IMGT000012		2468..2854
												EX2	IMGT000012		3552..3569
												EX3	IMGT000012		3727..3833
												EX4	IMGT000012		4157..4174
		TRBC2*02	P	(1)			3			17573	CM000289.1	EX1	NW_001114291	[1]	792712..793096
												EX2	NW_001114291	[1]	793592..793609
												EX3	NW_001114291	[1]	793751..793857
												EX4	NW_001114291	[1]	794149..794166
		TRBC2*03	F				3			AG07107	CM014338.1	EX1	IMGT000073		713754..714140
												EX2	IMGT000073		714636..714653
												EX3	IMGT000073		714795..714901
												EX4	IMGT000073		715195..715212

IMGT notes:

(1) frameshifts in EX1

IMGT references:

[1] Gibbs, R.A. et al., Science. 316(5822):222-234 (2007). PMID:17431167

More information:

See also (IMGT Scientific chart):

Created:: 05/10/2018
Last updated:: 22/09/2023
Authors:: Morgane Bertignac

IMGT Repertoire (IG and TR)

Gene table: rhesus monkey (Macaca mulatta) TRBC