IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		T	Pr	IMGT/LIGM-DB locus reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		T	Pr	Isolate	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers	Isolate	Clone names	Accession numbers	Positions in the sequence
TRDC	TRDC	TRDC*01	F	(1)			7			17573	CM002991.3	EX1	IMGT000013	881897..882175
												EX2	IMGT000013	882738..882803
												EX3	IMGT000013	883143..883256
												EX4UTR	IMGT000013	884472..885513
		TRDC*02	F	(1)			7					EX1	IMGT000026	120960..121238
												EX2	IMGT000026	121801..121866
												EX3	IMGT000026	122206..122319
												EX4UTR	IMGT000026	123531..124553
		TRDC*03	F	(1)			7			AG07107	CM014342.1	EX1	IMGT000076	971137..971415
												EX2	IMGT000076	971978..972043
												EX3	IMGT000076	972383..972496
												EX4UTR	IMGT000076	973708..974730

IMGT notes:

(1) The Macaca mulatta TRDC gene is functional. The splicing of EX3 uses an alternative functional ACCEPTOR-SPLICE located 6 nucleotides in 3' of the expected (by comparison to the location in the Homo sapiens TRDC gene) but non conserved splicing site, which leads to an EX3 shorter of two amino acids (Alanine and Isoleucine missing at the beginning of the second part of the CONNECTING-REGION) (V. Nguefack Ngoune and M.-P. Lefranc, 05/09/2018).

More information:

See also (IMGT Scientific chart):

Created:: 12/06/2018
Last updated:: 22/09/2023
Authors:: Viviane Nguefack Ngoune

IMGT Repertoire (IG and TR)

Gene table: Rhesus monkey (Macaca mulatta) TRDC