IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Serological markers or Allotype		Chromosomal localization	T	Pr	IMGT/LIGM-DB locus reference sequences							IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Serological markers or Allotype		Chromosomal localization	T	Pr	Isolate	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers		Isolate	Clone names	Accession numbers	Positions in the sequence
	IGHM	IGHM*01	P	(1)			1			mLemCat1	CM036472.1	CH1	IMGT000097	MAP	454515..454826
												CH2	IMGT000097	MAP	454947..455286
												CH3	IMGT000097	MAP	455785..456103
												CH4 (including CHS)	IMGT000097	MAP	456183..456578
												M1	IMGT000097	MAP	459676..459791
												M2	IMGT000097	MAP	459978..459983
	IGHG1	IGHG1*01	F				1			mLemCat1	CM036472.1	CH1	IMGT000097	MAP	484669..484962
												H	IMGT000097	MAP	485194..485233
												CH2	IMGT000097	MAP	485354..485683
												CH3 (including CHS)	IMGT000097	MAP	485802..486121
												M1	IMGT000097	MAP	487307..487437
												M2	IMGT000097	MAP	488620..488700
	IGHE	IGHE*01	F				1			mLemCat1	CM036472.1	CH1	IMGT000097	MAP	503772..504065
												CH2	IMGT000097	MAP	504303..504626
												CH3	IMGT000097	MAP	504714..505034
												CH4 (including CHS)	IMGT000097	MAP	505113..505442
												M1	IMGT000097	MAP	507334..507467
												M2	IMGT000097	MAP	507551..507619
	IGHA	IGHA*01	F				1			mLemCat1	CM036472.1	CH1	IMGT000097	MAP	515551..515852
												H+CH2	IMGT000097	MAP	516087..516413
												CH3 (including CHS)	IMGT000097	MAP	516639..517030
												M	IMGT000097	MAP	519743..519946

(s): trancript of a secreted chain.
(m): trancript of a membrane chain.

IMGT notes:

(1) STOP-CODON in CH4

IMGT references:

[1] Marques T. et al., Unpublished.
[2] Johnson,J. et al., Unpublished.

More information:

See also (IMGT Scientific chart):

Created:: 03/08/2022
Last updated:: 22/09/2023
Authors:: Turkan Samadova

IMGT Repertoire (IG and TR)

Gene table: Ring-tailed lemur (Lemur catta) IGHC