Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of western lowland gorilla (Gorilla gorilla gorilla) TRBJ IMGT group:
IMGT gene nameIMGT allele nameFctScore for
IMGT allele
confirmation		Chromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
IsolateClone namesAccession
numbers		Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)		Secondary
accession
numbers		R T PrIsolateClone namesAccession
numbers		Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)
TRBJ1-1 TRBJ1-1*01 F Kamilah BK064850✤ [1] MAP 525579-525665 KB3781 BK064852✤ [1] 526982-527068
KB3781 BK064853✤ [1] 526824-526910
Susie3 BK064851✤ 595244-595330
TRBJ1-2 TRBJ1-2*01 F Kamilah BK064850✤ [1] MAP 525727-525802 KB3781 BK064852✤ [1] 527130-527205
KB3781 BK064853✤ [1] 526972-527047
Susie3 BK064851✤ 595392-595467
TRBJ1-3 TRBJ1-3*01 F Kamilah BK064850✤ [1] MAP 526346-526423 KB3781 BK064852✤ [1] 527749-527826
KB3781 BK064853✤ [1] 527591-527668
Susie3 BK064851✤ 596011-596088
TRBJ1-4 TRBJ1-4*01 F Kamilah BK064850✤ [1] MAP 526941-527019 KB3781 BK064852✤ [1] 528344-528422
KB3781 BK064853✤ [1] 528186-528264
Susie3 BK064851✤ 596605-596683
TRBJ1-5 TRBJ1-5*01 F Kamilah BK064850✤ [1] MAP 527214-527291 KB3781 BK064852✤ [1] 528617-528694
TRBJ1-5 TRBJ1-5*02 F Susie3 BK064851✤ MAP 596878-596955 KB3781 BK064853✤ [1] 528459-528536
TRBJ1-6 TRBJ1-6*01 F Kamilah BK064850✤ [1] MAP 527704-527784 KB3781 BK064852✤ [1] 529107-529187
KB3781 BK064853✤ [1] 528949-529029
TRBJ1-6 TRBJ1-6*02 F Susie3 BK064851✤ MAP 597367-597447
TRBJ2-1 TRBJ2-1*01 F Kamilah BK064850✤ [1] MAP 535084-535161 KB3781 BK064852✤ [1] 536487-536564
KB3781 BK064853✤ [1] 536329-536406
Susie3 BK064851✤ 604747-604824
TRBJ2-2 TRBJ2-2*01 F Kamilah BK064850✤ [1] MAP 535279-535357 KB3781 BK064852✤ [1] 536682-536760
KB3781 BK064853✤ [1] 536524-536602
Susie3 BK064851✤ 604942-605020
TRBJ2-2P TRBJ2-2P*01 ORF (1) Kamilah BK064850✤ [1] MAP 535416-535489 KB3781 BK064852✤ [1] 536819-536892
KB3781 BK064853✤ [1] 536661-536734
Susie3 BK064851✤ 605079-605152
TRBJ2-3 TRBJ2-3*01 F Kamilah BK064850✤ [1] MAP 535565-535641 KB3781 BK064852✤ [1] 536968-537044
KB3781 BK064853✤ [1] 536810-536886
Susie3 BK064851✤ 605228-605304
TRBJ2-4 TRBJ2-4*01 F Kamilah BK064850✤ [1] MAP 535716-535793 KB3781 BK064852✤ [1] 537119-537196
KB3781 BK064853✤ [1] 536961-537038
Susie3 BK064851✤ 605379-605456
TRBJ2-5 TRBJ2-5*01 F Kamilah BK064850✤ [1] MAP 535837-535912 KB3781 BK064852✤ [1] 537240-537315
KB3781 BK064853✤ [1] 537082-537157
Susie3 BK064851✤ 605500-605575
TRBJ2-6 TRBJ2-6*01 F Kamilah BK064850✤ [1] MAP 535957-536037 KB3781 BK064852✤ [1] 537360-537440
KB3781 BK064853✤ [1] 537202-537282
Susie3 BK064851✤ 605620-605700
TRBJ2-7 TRBJ2-7*01 ORF (2) Kamilah BK064850✤ [1] MAP 536174-536248 KB3781 BK064852✤ [1] 537577-537651
Susie3 BK064851✤ F 605837-605911
TRBJ2-7 TRBJ2-7*02 F KB3781 BK064853✤ [1] MAP 537419-537493

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT notes: ↑
  1. noncanonical J-MOTIF: GRXG instead of FGXG, noncanonical J-NONAMER: cagctgccc instead of ggtttttgt
  2. noncanonical J-HEPTAMER: ctccgtg instead of ggctgtg,noncanonical J-NONAMER: ggtttgcct instead of ggtttttgt
IMGT references: ↑
  1. Manso,T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 50, no. D1, 2022, pp. D1262-D1272. PUBMED: 34875068