IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences								IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers				Strain	Clone names	Accession numbers	Positions in the sequence
TRAV1	TRAV1	TRAV1*01	ORF		+	+						AY030307	[1]	(1)	#c
	TRAV2	TRAV2*01	(F)		+	+						AY030308	[1]		#c
	TRAV3	TRAV3*01	(F)		+	+						AY030309	[1]		#c
	TRAV4	TRAV4*01	(F)		+	+						AY030310	[1]		#c
	TRAV5	TRAV5*01	(F)		+	+						AY030311	[1]		#c
	TRAV6	TRAV6*01	(F)		+	+						AY029536			#c

#c: rearranged cDNA.

IMGT notes:

(1) ORF because there is no 1st-CYS

IMGT references:

[1] Fellah J.S. et al., Immunogenetics, 45, 235-241 (1997). PMID:9002443

See also (IMGT Scientific chart):

Created:: 14/05/2003
Last updated:: 22/09/2023
Authors:: Delphine Guiraudou

IMGT Repertoire (IG and TR)

Gene table: axolotl (Ambystoma mexicanum) TRAV