IMGT Repertoire (IG and TR)


Gene table: bovine (Bos taurus) TRGC

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Exons Accession numbers Positions in the sequence Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
TRGC1 TRGC1*01 F Holstein BTG2 EX1 D90409 [1] (1) c
EX2A D90409 [1] c
EX2B D90409 [1] c
EX2C D90409 [1] c
EX3 D90409 [1] c
TRGC1*02 F Holstein BTG9 EX1 D90410 [1] c
EX2A D90410 [1] c
EX2B D90410 [1] c
EX2C D90410 [1] c
EX3 D90410 [1] c
TRGC1*03 F Holstein BTG20 EX1 D90413 [1] c Holstein BTGT4 X63682 [3] c
BTGC8 X63683 [3] c
BTGT2 X63684 [3] c
EX2A D90413 [1] c Holstein BTGT4 X63682 [3] c
BTGC8 X63683 [3] c
BTGT2 X63684 [3] c
EX2B D90413 [1] c Holstein BTGT4 X63682 [3] c
BTGC8 X63683 [3] c
BTGT2 X63684 [3] c
EX2C D90413 [1] c Holstein BTGT4 X63682 [3] c
BTGC8 X63683 [3] c
BTGT2 X63684 [3] c
EX3 D90413 [1] c Holstein BTGT4 X63682 [3] c
BTGC8 X63683 [3] c
BTGT2 X63684 [3] c
TRGC1*04 F TRGC1 MAP EX1 AY644518 [4]
EX2A AY644518 [4]
EX2B AY644518 [4]
EX2C AY644518 [4]
EX3 AY644518 [4]
TRGC2 TRGC2*01 F Holstein BTG15 EX1 D90411 [1] c
EX2A D90411 [1] c
EX2B D90411 [1] c
EX2C D90411 [1] c
EX3 D90411 [1] c
TRGC2*02 F Holstein BTG15 EX1 D90412 [1] (2) c
EX2A D90412 [1] (2) c
EX2B D90412 [1] (2) c
EX2C D90412 [1] (2) c
EX3 D90412 [1] (2) c
TRGC2*03 F Holstein BTG25 EX1 D90415 [1] c Holstein GTG32 D90417 [1] c
EX2A D90415 [1] c Holstein GTG32 D90417 [1] c
EX2B D90415 [1] c Holstein GTG32 D90417 [1] c
EX2C D90415 [1] c Holstein GTG32 D90417 [1] c
EX3 D90415 [1] c Holstein GTG32 D90417 [1] c
TRGC2*04 F Holstein BTG27 EX1 D90416 [1] c
EX2A D90416 [1] c
EX2B D90416 [1] c
EX2C D90416 [1] c
EX3 D90416 [1] c
TRGC2*05 F TRGC2 MAP EX1 AY644518 [4]
EX2A AY644518 [4]
EX2B AY644518 [4]
EX2C AY644518 [4]
EX3 AY644518 [4]
TRGC3 TRGC3*01 F Holstein BTG24 EX1 D90414 [1] c
EX2A D90414 [1] c
EX2C D90414 [1] c
EX3 D90414 [1] c
TRGC3*02 F TRGC3 MAP EX1 AY644517 [4]
EX2A AY644517 [4]
EX2C AY644517 [4]
EX3 AY644517 [4]
TRGC4 TRGC4*01 F Holstein BTGT1 EX1 X63680 [2] c
EX2A X63680 [2] c
EX2B X63680 [2] c
EX2C X63680 [2] c
EX3 X63680 [2] c
TRGC4*02 F TRGC4 MAP EX1 AY644517 [4]
EX2A AY644517 [4]
EX2B AY644517 [4]
EX2C AY644517 [4]
EX3 AY644517 [4]
TRGC5 TRGC5*01 (F) TRGC5 MAP EX1 AY735449 [5] c
EX2A AY735449 [5] c
EX3 AY735449 [5] c
TRGC5*02 F TRGC5 MAP EX1 AY644517 [4]
EX2A AY644517 [4]
EX3 AY644517 [4]
TRGC5*03 F TRGC5 MAP EX1 DQ179593 [6] c
EX2A DQ179593 [6] c
EX3 DQ179593 [6] c
TRGC6 TRGC6*01 F TRGC6 MAP EX1 AY644518 [4]
EX2A AY644518 [4]
EX2B AY644518 [4]
EX2C AY644518 [4]
EX3 AY644518 [4]
TRGC6*02 F TRGC6 MAP EX1 DQ179594 [6] c
EX2A DQ179594 [6] c
EX2B DQ179594 [6] c
EX2C DQ179594 [6] c
EX3 DQ179594 [6] c
TRGC7 TRGC7*01 P (3) TRGC7 MAP EX1 AY644517 [4]
EX2A AY644517 [4]
EX2C AY644517 [4]
EX3 AY644517 [4]

MAP: Mapped reference sequences.
c: cDNA sequence.

IMGT notes:
  1. (1) The sequence described in the manuscript is different from the one submitted to the EMBL data library. Nucleotide t at position 738 in EMBL flat file (codon 20 in EX3) which may represent a submission error, nucleotide c in the manuscript (F20>L). Nucleotides gc (positions 804-805 in EMBL flat file (codon 42 in EX3) which may represent a submission error, nucleotides tg in the manuscript (V42>C)
  2. (2) The sequence described in the manuscript is different from the one submitted to EMBL: DELETION of 1 nucleotide a (between positions 440-441) which may represent a submission error leading to a frameshift.
  3. (3) Pseudogene because of STOP-CODON in EX1 leading to a frameshift.
IMGT references:
  1. [1] Takeuchi N. et al., Immunogenetics, 35, 89-96 (1992). PMID:1346526
  2. [2] Ishiguro N. et al., Immunogenetics, 38, 437-443 (1993). PMID:8406615
  3. [3] Ishiguro N. et al., Vet. Immunol. Immunopathol., 41, 1-17 (1994). PMID:8066987
  4. [4] Conrad M. et al., Vet. Immunol. Immunopathol., 115, 346-356 (2007). PMID:17141331
  5. [5] Lahmers K.K. et al., J. Leukoc. Biol., 77, 199-208 (2005). PMID:15522917
  6. [6] Herzig C. et al., Immunogenetics, 58, 138-151 (2006). PMID:16541255
Created:
25/06/2001
Last updated:
22/09/2023
Authors:
Joumana Jabado-Michaloud, Johanne Abad, Christèle Martinez-Jean