IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Breed	Clone names	Accession numbers	Positions in the sequence		Secondary accession numbers	Breed			Clone names	Accession numbers	Positions in the sequence
	TRGJ1-1	TRGJ1-1*01	F		+	+			Holstein	TRGC2	MAP		AY644518	[1]				Holstein	CH240-248F24	AC172685	[2]
	TRGJ1-2	TRGJ1-2*01	F		+	+			Holstein	TRGC2	MAP		AY644518	[1]				Holstein	CH240-248F24	AC172685	[2]
		TRGJ1-2*02	(F)		+	+			Holstein	BTGV18, TRGJ1S3			D16127	[3]	#c
		TRGJ1-2*03	(F)		+	+			Holstein	BTG22, TRGJ1S3			D16129	[3]	#c
	TRGJ2-1	TRGJ2-1*01	F		+	+			Holstein	CH240-248F24	MAP		AC172685	[2]
		TRGJ2-1*02	(F)		+	+			Holstein	BTGV8, TRGJ2S2			D16120	[3]	#c
		TRGJ2-1*03	(F)		+	+			Holstein	BTGV4, TRGJ2S2			D16118	[3]	#c
	TRGJ2-2	TRGJ2-2*01	F		+	+			Holstein	TRGC2	MAP		AY644518	[1]				Holstein	CH240-248F24	AC172685	[2]
		TRGJ2-2*02	(F)		+	+			Holstein	BTG10, TRGJ1S2			D16121	[3]	#c
		TRGJ2-2*03	(F)		+	+			Holstein	BTGV19, TRGJ1S3			D16128	[3]	#c
	TRGJ3-1	TRGJ3-1*01	F		+	+			Holstein	TCRG1	MAP		AY644517	[1]
	TRGJ3-1	TRGJ3-1*02	(F)		+	+			Holstein	BTGV1, TRGJ2S1			D13648	[3]	#c
	TRGJ4-1	TRGJ4-1*01	F		+	+			Holstein	TCRG1	MAP		AY644517	[1]
	TRGJ4-2	TRGJ4-2*01	F		+	+			Holstein	TCRG1	MAP		AY644517	[1]
	TRGJ5-1	TRGJ5-1*01	F		+	+			Herford	TCRG5	MAP		NW_937068	[1]
	TRGJ6-1	TRGJ6-1*01	F		+	+			Holstein	CH240-248F24	MAP		AC172685	[2]

#c: rearranged cDNA.
MAP: Mapped reference sequences.

IMGT notes:

(1) J-GENEs with a Tyrosine or a Tryptophane located four amino acids before the conserved Phe-Gly-X-Gly motif have been assigned to subgroups 1 and 2, respectively.

IMGT references:

[1] Herzig C. et al., Immunogenetics, 58, 138-151 (2006). PMID:16541255
[2] Lahmers K.K. et al., J. Leukoc. Biol., 77, 199-208 (2005). PMID:15522917
[3] Hein W. R. et al., Immunology, 91, 58-64 (1997). PMID:9203966

See also (IMGT Scientific chart):

Created:: 15/09/2011
Last updated:: 22/09/2023
Authors:: Joumana Jabado-Michaloud

IMGT Repertoire (IG and TR)

Gene table: bovine (Bos taurus) TRGJ