IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		T	Pr	IMGT/LIGM-DB locus reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		T	Pr	Breed	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers	Breed		Clone names	Accession numbers	Positions in the sequence
	IGLC1	IGLC1*01	F				D3			Abyssinian	CM001389.3	C-REGION	IMGT000038	MAP	841567..841883
	IGLC2	IGLC2*01	F				D3			Abyssinian	CM001389.3	C-REGION	IMGT000038	MAP	845865..846181
	IGLC3	IGLC3*01	P	(1)			D3			Abyssinian	CM001389.3	C-REGION	IMGT000038	MAP	851112..851416
	IGLC4	IGLC4*01	F				D3			Abyssinian	CM001389.3	C-REGION	IMGT000038	MAP	857113..857429
	IGLC4P	IGLC4P*01	P	(1)			D3			Abyssinian	CM001389.3	C-REGION	IMGT000038	MAP	856285..856615
	IGLC5	IGLC5*01	F				D3			Abyssinian	CM001389.3	C-REGION	IMGT000038	MAP	862003..862319
	IGLC6	IGLC6*01	P	(2)			D3			Abyssinian	CM001389.3	C-REGION	IMGT000038	MAP	865778..866091
	IGLC7	IGLC7*01	P	(1)			D3			Abyssinian	CM001389.3	C-REGION	IMGT000038	MAP	881313..881633
	IGLC8	IGLC8*01	P	(1)			D3			Abyssinian	CM001389.3	C-REGION	IMGT000038	MAP	886259..886574
	IGLC9	IGLC9*01	F				D3			Abyssinian	IGLC7, CM001389.3	C-REGION	IMGT000038	MAP	890885..891201
	IGLC10	IGLC10*01	P	(1)			D3			Abyssinian	IGLC8, CM001389.3	C-REGION	IMGT000038	MAP	895776..896091
	IGLC11	IGLC11*01	P	(1)			D3			Abyssinian	IGLC9, CM001389.3	C-REGION	IMGT000038	MAP	900407..900719

MAP: Mapped reference sequences.

IMGT notes:

(1) frameshifts in C-REGION
(2) STOP-CODON in C-REGION

More information:

See also (IMGT Scientific chart):

Created:: 05/03/2019
Last updated:: 22/09/2023
Authors:: Perrine Pégorier

IMGT Repertoire (IG and TR)

Gene table: domestic cat (Felis catus) IGLC