IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	IMGT/LIGM-DB locus reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	Breed	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)	Secondary accession numbers	Breed		Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)
	IGLJ1	IGLJ1*01	F			D3				Abyssinian	CM001389.3		IMGT000038	MAP	840157..840222
	IGLJ2	IGLJ2*01	F			D3				Abyssinian	CM001389.3		IMGT000038	MAP	844133..844198
	IGLJ3	IGLJ3*01	ORF	(1)		D3				Abyssinian	CM001389.3		IMGT000038	MAP	849731..849796
	IGLJ4	IGLJ4*01	F			D3				Abyssinian	CM001389.3		IMGT000038	MAP	852921..852986
	IGLJ5	IGLJ5*01	F			D3				Abyssinian	CM001389.3		IMGT000038	MAP	859966..860031
	IGLJ6	IGLJ6*01	F			D3				Abyssinian	CM001389.3		IMGT000038	MAP	865705..865770
	IGLJ7	IGLJ7*01	F			D3				Abyssinian	CM001389.3		IMGT000038	MAP	879307..879372
	IGLJ8	IGLJ8*01	F			D3				Abyssinian	CM001389.3		IMGT000038	MAP	884881..884946
	IGLJ9	IGLJ9*01	F			D3				Abyssinian	CM001389.3		IMGT000038	MAP	888847..888912
	IGLJ10	IGLJ10*01	F			D3				Abyssinian	CM001389.3		IMGT000038	MAP	894398..894463
	IGLJ11	IGLJ11*01	F			D3				Abyssinian	IGLJ8, CM001389.3		IMGT000038	MAP	898364..898429
	IGLJ12	IGLJ12*01	ORF	(2)		D3				Abyssinian	IGLJ9, CM001389.3		IMGT000038	MAP	902222..902287

MAP: Mapped reference sequences.

IMGT notes:

(1) noncanonical J-HEPTAMER: cgcaatg instead of cacagtg, noncanonical J-MOTIF: FSXG instead of FGXG, noncanonical DONOR-SPLICE: nat instead of ngt
(2) noncanonical J-MOTIF: FNXG instead of FGXG

More information:

See also (IMGT Scientific chart):

Created:: 05/03/2019
Last updated:: 22/09/2023
Authors:: Perrine Pégorier

IMGT Repertoire (IG and TR)

Gene table: domestic cat (Felis catus) IGLJ