IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	IMGT/LIGM-DB locus reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	Breed	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)	Secondary accession numbers	Breed		Clone names		Accession numbers	Positions in the sequence (J-GENE-UNIT)
	TRGJ1	TRGJ1-1*01	P	(1)		A2				Abyssinian	CM001379.3		IMGT000036	MAP	27040..27133
	TRGJ1	TRGJ1-2*01	F			A2				Abyssinian	CM001379.3		IMGT000036	MAP	29410..29499
	TRGJ2	TRGJ2-1*01	P	(1)		A2				Abyssinian	CM001379.3		IMGT000036	MAP	70945..71041
		TRGJ2-2*01	F			A2	+	+		Abyssinian	CM001379.3		IMGT000036	MAP	72770..72856
		TRGJ2-3*01	P	(2)		A2				Abyssinian	CM001379.3		IMGT000036	MAP	72106..72183	(5)
	TRGJ3	TRGJ3-1*01	P	(1)		A2				Abyssinian	CM001379.3		IMGT000036	MAP	116646..116739
	TRGJ3	TRGJ3-2*01	F			A2	+	+		Abyssinian	CM001379.3		IMGT000036	MAP	120023..120109
	TRGJ4	TRGJ4-1*01	P	(3)		A2				Abyssinian	CM001379.3		IMGT000036	MAP	complement(173229..173286)	(5)
	TRGJ5	TRGJ5-1*01	ORF	(4)		A2	+	+		Abyssinian	CM001379.3		IMGT000036	MAP	complement(221548..221635)
	TRGJ5	TRGJ5-2*01	P	(1)		A2				Abyssinian	CM001379.3		IMGT000036	MAP	complement(219199..219285)
	TRGJ6	TRGJ6-1*01	ORF	(4)		A2	+	+		Abyssinian	CM001379.3		IMGT000036	MAP	271357..271444
	TRGJ6	TRGJ6-2*01	F			A2	+	+		Abyssinian	CM001379.3		IMGT000036	MAP	274240..274343

MAP: Mapped reference sequences.

IMGT notes:

(1) STOP-CODON in J-REGION
(2) frameshift in J-REGION, No J-MOTIF, No J-RS
(3) frameshift in J-REGION, No J-RS
(4) noncanonical J-MOTIF: FAXG instead of FGXG
(5) Positions of J-REGION

More information:

See also (IMGT Scientific chart):

Created:: 19/02/2019
Last updated:: 22/09/2023
Authors:: Géraldine Folch

IMGT Repertoire (IG and TR)

Gene table: domestic cat (Felis catus) TRGJ