Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization		 T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Exons Accession numbers Positions in the sequence Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
TRGC1 TRGC1*01 ORF (1) Boxer CM000018.3 EX1 IMGT000006 [2] 20957..21274 Boxer AAEX02028369 [1] complement(88782-89099)
EX2B IMGT000006 [2] 31493..31540 Boxer AAEX02028369 [1] complement(78516-78563)
EX3 IMGT000006 [2] 33455..33594 Boxer AAEX02028369 [1] complement(76462-76601)
TRGC2 TRGC2*01 F Boxer CM000018.3 EX1 IMGT000006 [2] 78049..78375 Boxer AAEX02028369 [1] complement(31681-32007)
EX2A IMGT000006 [2] 80266..80391 Boxer AAEX02028369 [1] complement(29665-29790)
EX2B IMGT000006 [2] 89314..89361 Boxer AAEX02028369 [1] complement(20695-20742)
EX3 IMGT000006 [2] 90500..90639 Boxer AAEX02028369 [1] complement(19417-19556)
TRGC3 TRGC3*01 F Boxer CM000018.3 EX1 IMGT000006 [2] 130344..130673 Boxer AAEX02028368 [1] complement(84840-85169)
EX2A IMGT000006 [2] 132659..132784 Boxer AAEX02028368 [1] complement(82729-82854)
EX2B IMGT000006 [2] 140123..140170 Boxer AAEX02028368 [1] complement(75343-75390)
EX3 IMGT000006 [2] 142040..142179 Boxer AAEX02028368 [1] complement(73334-73473)
TRGC4 TRGC4*01 F Boxer CM000018.3 EX1 IMGT000006 [2] 191299..191625 Boxer AAEX02028368 [1] complement(23888-24214)
EX2A IMGT000006 [2] 194916..195041 Boxer AAEX02028368 [1] complement(20472-20597)
EX2B IMGT000006 [2] 204916..204963 Boxer AAEX02028368 [1] complement(10550-10597)
EX3 IMGT000006 [2] 206590..206729 Boxer AAEX02028368 [1] complement(8784-8923)
TRGC5 TRGC5*01 F Boxer CM000018.3 EX1 IMGT000006 [2] 273502..273831 Boxer AAEX02028366 [1] complement(31727-32056)
EX2A IMGT000006 [2] 275770..275895 Boxer AAEX02028366 [1] complement(29663-29788)
EX3 IMGT000006 [2] 284321..284457 Boxer AAEX02028366 [1] complement(21101-21237)
TRGC6 TRGC6*01 P (2) Boxer CM000018.3 EX1 IMGT000006 [2] 333228..333557 Boxer AAEX02028365 [1] complement(115175-115504)
EX2B IMGT000006 [2] 336792..336839 Boxer AAEX02028365 [1] complement(111893-111940)
EX3 IMGT000006 [2] 339326..339465 Boxer AAEX02028365 [1] complement(109267-109406)
TRGC7 TRGC7*01 F Boxer CM000018.3 EX1 IMGT000006 [2] 411815..412144 Boxer AAEX02028365 [1] complement(36588-36917)
EX2B IMGT000006 [2] 415631..415678 Boxer AAEX02028365 [1] complement(33054-33101)
EX3 IMGT000006 [2] 417544..417683 Boxer AAEX02028365 [1] complement(31049-31188)
TRGC8 TRGC8*01 F Boxer CM000018.3 EX1 IMGT000006 [2] 440527..440856 Boxer AAEX02028365 [1] complement(7876-8205)
EX2B IMGT000006 [2] 444368..444403 Boxer AAEX02028365 [1] complement(4329-4364)
EX3 IMGT000006 [2] 446733..446872 Boxer AAEX02028365 [1] complement(1860-1999)
IMGT notes:
  1. (1) noncanonical ACCEPTOR-SPLICE: naann instead of nagnn in EX3.
  2. (2) frameshift in EX3.
IMGT references:
  1. [1] Lindblad-Toh K. et al., Nature, 438, 803-819 (2005). PMID:16341006
  2. [2] Martin J. et al. Immunogenetics 2018 Apr;70(4):223-236 (2018). doi: 10.1007/s00251-017-1028-0. Epub 2017 Sep 19.. PMID:28924718
Created:
12/01/2018
Last updated:
22/09/2023
Authors:
Fatena Bellahcene, Laurène Picandet, Géraldine Folch