Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization		 R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)		 Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRGJ1-1 TRGJ1-1*01 P (1) 18 Boxer CM000018.3 IMGT000006 [2] 11219..11311 Boxer AAEX02028369 [1] complement(98745..98811)
TRGJ1-2 TRGJ1-2*01 ORF (5) 18 Boxer CM000018.3 IMGT000006 [2] 13591..13677 Boxer AAEX02028369 [1] complement(96379..96438)
TRGJ2-1 TRGJ2-1*01 P (1) 18 + + Boxer CM000018.3 IMGT000006 [2] 68488..68581 Boxer AAEX02028369 [1] complement(41475..41541)
TRGJ2-2 TRGJ2-2*01 F 18 + Boxer CM000018.3 IMGT000006 [2] 71285..71371 Boxer AAEX02028369 [1] complement(38685..38744)
TRGJ3-1 TRGJ3-1*01 P (1) 18 Boxer CM000018.3 IMGT000006 [2] 123448..123541 Boxer AAEX02028368 [1] complement(91972..92038)
TRGJ3-2 TRGJ3-2*01 ORF (2) 18 + + Boxer CM000018.3 IMGT000006 [2] 125804..125889 Boxer AAEX02028368 [1] complement(89624..89683)
TRGJ4-1 TRGJ4-1*01 P (1) 18 Boxer CM000018.3 IMGT000006 [2] 180964..181057 Boxer AAEX02028368 [1] complement(34456..34522)
TRGJ4-2 TRGJ4-2*01 F 18 Boxer CM000018.3 IMGT000006 [2] 183214..183300 Boxer AAEX02028368 [1] complement(32213..32272)
TRGJ5-1 TRGJ5-1*01 ORF (3) 18 Boxer CM000018.3 IMGT000006 [2] 266042..266130 Boxer AAEX02028366 [1] complement(39428..39489)
TRGJ5-2 TRGJ5-2*01 F 18 Boxer CM000018.3 IMGT000006 [2] 268497..268583 Boxer AAEX02028366 [1] complement(36975..37034)
TRGJ6-1 TRGJ6-1*01 F 18 Boxer CM000018.3 IMGT000006 [2] 324816..324903 Boxer AAEX02028365 [1] complement(123889..123916)
TRGJ6-2 TRGJ6-2*01 ORF (4) 18 Boxer CM000018.3 IMGT000006 [2] 327846..327934 Boxer AAEX02028365 [1] complement(120798..120858)
TRGJ7-1 TRGJ7-1*01 P (1) 18 Boxer CM000018.3 IMGT000006 [2] 406050..406139 Boxer AAEX02028365 [1] complement(42593..42655)
TRGJ7-2 TRGJ7-2*01 F 18 Boxer CM000018.3 IMGT000006 [2] 407699..407786 Boxer AAEX02028365 [1] complement(40946..41006)
TRGJ8-1 TRGJ8-1*01 F 18 + + Boxer CM000018.3 IMGT000006 [2] 433070..433157 Boxer AAEX02028365 [1] complement(15575..15635)
TRGJ8-2 TRGJ8-2*01 P (1) 18 Boxer CM000018.3 IMGT000006 [2] 437830..437915 Boxer AAEX02028365 [1] complement(10817..10875)
IMGT notes:
  1. (1) STOP-CODON in J-REGION.
  2. (2) noncanonical J-MOTIF: LGXG instead of FGXG.
  3. (3) noncanonical J-MOTIF: FAXG instead of FGXG.
  4. (4) noncanonical J-MOTIF: KVXG instead of FGXG.
  5. (5) noncanonical J-NONAMER: tatttctgt instead of gatttttgt
IMGT references:
  1. [1] Lindblad-Toh K. et al., Nature, 438, 803-819 (2005). PMID:16341006
  2. [2] Martin J. et al. Immunogenetics 2018 Apr;70(4):223-236 (2018). doi: 10.1007/s00251-017-1028-0. Epub 2017 Sep 19.. PMID:28924718
Created:
19/11/2009
Last updated:
22/09/2023
Authors:
Fatena Bellahcene, Laurène Picandet, Géraldine Folch