Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRDJ1 TRDJ1*01 ORF (1) JH481615 [1] 69819..69897
TRDJ2 TRDJ2*01 ORF (2) JH481615 [1] 76738..76820
TRDJ3 TRDJ3*01 P (3) JH481615 [1] 83153..83239
TRDJ4 TRDJ4*01 F + + JH481615 [1] 75318..75394
IMGT notes:
  1. (1) noncanonical J-NONAMER: ggtatttgg instead of ggtttttgg, noncanonical J-HEPTAMER: cgctgta instead of ggtagtg, noncanonical J-MOTIF: FRXG instead of FGXG
  2. (2) noncanonical J-HEPTAMER: aatggtg instead of cacagtg
  3. (3) STOP-CODON in J-REGION
IMGT references:
  1. [1] Linguiti, G. et al., BMC Genomics, 17, 634 (2016). PMID:27528257
Created:
31/08/2018
Last updated:
22/09/2023
Authors:
Perrine Pégorier