IMGT Repertoire (IG and TR)


Gene table: house mouse (Mus musculus) IGKV

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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Truncated pseudogenes not assigned to subgroups with functional genes

IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal localization R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence (V-REGION) Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence (V-REGION)
IGKV(I) IGKV(I)-38-1 IGKV(I)-38-1*01 P (3) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP complement(2381978-2382261) (2) DBA_2J IMGT000125 [2] MAP complement(2384664-2384947) (2)
IGKV(I)-70-1 IGKV(I)-70-1*01 P (4) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 1714171-1714459 (2) DBA_2J IMGT000125 [2] MAP 1716856-1717144 (2)
IGKV(I)-87-1 IGKV(I)-87-1*01 P (5) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP complement(1347904-1348181) (2) DBA_2J IMGT000125 [2] MAP complement(1348601-1348878) (2)
IGKV(I)-87-4 IGKV(I)-87-4*01 P (6) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 1327487-1327985 (1) DBA_2J IMGT000125 [2] MAP 1328182-1328680 (1)
IGKV(I)-91-1 IGKV(I)-91-1*01 P (22) 6 (30.0 cM) DBA_2J IMGT000125 [2] MAP complement(1217849..1218111) (2)
IGKV(I)-102-1 IGKV(I)-102-1*01 P (4) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 915862-916136 (2) DBA_2J IMGT000125 [2] MAP 916002-916276 (2)
IGKV(I)-104-1 IGKV(I)-104-1*01 P (7) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP complement(849969-850253) (2) DBA_2J IMGT000125 [2] MAP complement(850091-850375) (2)
IGKV(I)-112-1 IGKV(I)-112-1*01 P (8) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 670574-670842 (2) DBA_2J IMGT000125 [2] MAP 670656-670924 (2)
IGKV(I)-118-3 IGKV(I)-118-3*01 P (6) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 554934-555424 (1) DBA_2J IMGT000125 [2] MAP 554975-555465 (1)
IGKV(I)-121-1 IGKV(I)-121-1*01 P (9) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 479716-480210 (1) DBA_2J IMGT000125 [2] MAP 479755-480249 (1)
IGKV(I)-136-1 IGKV(I)-136-1*01 P (4) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 23184-23298 (2) DBA_2J IMGT000125 [2] MAP 22906-23020 (2)
IGKV(II) IGKV(II)-14-1 IGKV(II)-14-1*01 P (23) 6 (30.0 cM) DBA_2J IMGT000125 [2] MAP 2881010-2881563 (1)
IGKV(II)-22-1 IGKV(II)-22-1*01 P (10) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 2749272-2749825 (1) DBA_2J IMGT000125 [2] MAP 2751988-2752541 (1)
IGKV(II)-34-2 IGKV(II)-34-2*01 P (11) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP complement(2488697-2488966) (2) DBA_2J IMGT000125 [2] MAP complement(2491389-2491658) (2)
IGKV(II)-39-1 IGKV(II)-39-1*01 P (12) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 2347804-2347964 (2) DBA_2J IMGT000125 [2] MAP 2350501-2350661 (2)
IGKV(II)-42-1 IGKV(II)-42-1*01 P (13) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP complement(2285131-2286230) (1) DBA_2J IMGT000125 [2] MAP complement(2287813-2288912) (1)
IGKV(II)-46-1 IGKV(II)-46-1*01 P (14) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP complement(2210191-2210461) (2) DBA_2J IMGT000125 [2] MAP complement(2212871-2213141) (2)
IGKV(II)-87-3 IGKV(II)-87-3*01 P (15) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP complement(1329761-1330377) (1) DBA_2J IMGT000125 [2] MAP complement(1330456-1331072) (1)
IGKV(II)-98-1 IGKV(II)-98-1*01 P (12) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 1000284-1000556 (2) DBA_2J IMGT000125 [2] MAP 1000432-1000704 (2)
IGKV(II)-99-1 IGKV(II)-99-1*01 P (16) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 984535-985210 (1) DBA_2J IMGT000125 [2] MAP 984681-985356 (1)
IGKV(II)-124-1 IGKV(II)-124-1*01 P (17) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 387236-387993 (1) DBA_2J IMGT000125 [2] MAP 387272-388029 (1)
IGKV(II)-129-1 IGKV(II)-129-1*01 P (6) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 252660-253419 (1) DBA_2J IMGT000125 [2] MAP 252482-253241 (1)
IGKV(II)-130-1 IGKV(II)-130-1*01 P (18) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP complement(225167-225416) (2) DBA_2J IMGT000125 [2] MAP complement(224989-225238) (2)
IGKV(II)-132-1 IGKV(II)-132-1*01 P (19) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 209129-209421 (2) DBA_2J IMGT000125 [2] MAP 208946-209238 (2)
IGKV(II)-134-2 IGKV(II)-134-2*01 P (24) 6 (30.0 cM) DBA_2J IMGT000125 [2] MAP 101297-101589 (2)
IGKV(III) IGKV(III)-34-1 IGKV(III)-34-1*01 P (20) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP complement(2494676-2495275) (1) DBA_2J IMGT000125 [2] MAP complement(2497368-2497967) (1)
IGKV(III)-106-1 IGKV(III)-106-1*01 P (21) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 789457-789729 (2) DBA_2J IMGT000125 [2] MAP 789560-789832 (2)
IGKV(III)-125-1 IGKV(III)-125-1*01 P (14) 6 (30.0 cM) C57BL/6J IMGT000068 [1] MAP 364641-364893 (2) DBA_2J IMGT000125 [2] MAP 364677-364929 (2)

MAP: mapped sequences.

IMGT notes:
  1. (1) Position of L-V-GENE-UNIT
  2. (2) Position of V-REGION
  3. (3) no L-PART1, no L-PART2, frameshifts in V-REGION: several insertions and deletions
  4. (4) truncated pseudogene not assigned to subgroups with functional genes
  5. (5) no INIT-CODON: Thr instead of Met, no DONOR-SPLICE, frameshifts in V-REGION: several deletions, no V-RS
  6. (6) frameshifts in V-REGION: several insertions and deletions
  7. (7) no L-PART1, no L-PART2, no 1st-CYS: STOP-CODON instead of Cys, frameshift in V-REGION: insertion of 1 nt in FR2-IMGT
  8. (8) frameshifts in V-REGION: several insertions and deletions, no V-RS
  9. (9) frameshift in L-PART1, frameshifts in V-REGION: several insertions and deletions
  10. (10) frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
  11. (11) several STOP-CODON in L-PART1, frameshifts in V-REGION: several insertions and deletions, no V-RS
  12. (12) no L-PART1, frameshifts in V-REGION: several insertions and deletions
  13. (13) no L-PART2, frameshifts in V-REGION: several insertions and deletions
  14. (14) no L-PART1, frameshifts in V-REGION: several insertions and deletions, no V-RS
  15. (15) STOP-CODON in L-PART1, no L-PART2, frameshifts in V-REGION: several insertions and deletions
  16. (16) STOP-CODON in L-PART1, frameshifts in V-REGION: several insertions and deletions
  17. (17) no L-PART2, several STOP-CODON in V-REGION
  18. (18) frameshift in L-PART1, frameshifts in V-REGION: several insertions and deletions, no V-RS
  19. (19) no L-PART1, frameshifts in V-REGION: several deletions
  20. (20) no INIT-CODON: Gln instead of Met, frameshifts in V-REGION: several insertions and deletions
  21. (21) STOP-CODON in V-REGION: position 9, frameshift in V-REGION: deletion of 2 nt in FR1-IMGT, no V-RS
  22. (22) no L-PART1, frameshifts in V-REGION: several insertions and deletions, truncated pseudogene not assigned to subgroups with functional genes, no V-RS
  23. (23) frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
  24. (24) no INIT-CODON: Iso instead of Met, frameshifts in V-REGION: several insertions and deletions
IMGT references:
  1. [1] Church,D.M. et al., PLoS Biol. 9 (7), E1001091 (2011). PMID:21750661
  2. [2] Keane,T. et al., Unpublished.
Created:
15/12/2022
Last updated:
15/07/2025
Authors:
Guilhem ZEITOUN