Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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Positions in contigs: limits from the first nucleotide of V-REGION to the last nucleotide.

IMGT subgroup IMGT gene name IMGT allele name Fct Haplotypes R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGLV1 IGLV1S1 IGLV1S1*01 P (1) Thorbecke inbred NW_003159316 1554539-1554833
IGLV1S2 IGLV1S2*01 ORF (2) Thorbecke inbred NW_003159316 1596647-1596919
IGLV1S3 IGLV1S3*01 ORF (3) Thorbecke inbred NW_003159316 1640002-1640297
IGLV2 IGLV2S1 IGLV2S1*01 F Thorbecke inbred NW_003159316 1776074-1776370
IGLV2S2 IGLV2S2*01 F Thorbecke inbred NW_003159316 1779194-1779490
IGLV2S3 IGLV2S3*01 P (4) Thorbecke inbred NW_003159316 1780445-1780742
IGLV2S4 IGLV2S4*01 P (5) Thorbecke inbred NW_003159316 1784385-1784681
IGLV2S5 IGLV2S5*01 P (6) Thorbecke inbred NW_003159316 1788168-1788447
IGLV3 IGLV3S1 IGLV3S1*01 P (7) Thorbecke inbred NW_003159316 1796451-1796749
IGLV3S2 IGLV3S2*01 F Thorbecke inbred NW_003159316 1801120-1801407
IGLV3S3 IGLV3S3*01 P (8) Thorbecke inbred NW_003159316 1805633-1805920
IGLV3S4 IGLV3S4*01 P (9) Thorbecke inbred NW_003159316 1811124-1811413
IGLV3S5 IGLV3S5*01 P (10) Thorbecke inbred NW_003159316 1815002-1815299
IGLV3S6 IGLV3S6*01 F Thorbecke inbred NW_003159316 1818579-1818866
IGLV3S7 IGLV3S7*01 F (11) + Thorbecke inbred NW_003159316 1823993-1824291
IGLV3S8 IGLV3S8*01 P (12) Thorbecke inbred NW_003159316 1827372-1828018
IGLV3S9 IGLV3S9*01 F Thorbecke inbred NW_003159316 1832748-1833035
IGLV3S10 IGLV3S10*01 P (13) Thorbecke inbred NW_003159316 1837341-1837388
IGLV4 IGLV4S1 IGLV4S1*01 P (14) Thorbecke inbred NW_003159316 1551601-1551912
IGLV4S2 IGLV4S2*01 P (15) Thorbecke inbred NW_003159316 1565150-1565462
IGLV4S3 IGLV4S3*01 F + Thorbecke inbred NW_003159316 1586816-1587116
IGLV4S4 IGLV4S4*01 F + Thorbecke inbred NW_003159316 1589221-1589521
IGLV4S5 IGLV4S5*01 P (16) Thorbecke inbred NW_003159316 1614190-1614502
IGLV4S6 IGLV4S6*01 P (17) Thorbecke inbred NW_003159316 1621502-1621814
IGLV4S7 IGLV4S7*01 P (18) Thorbecke inbred NW_003159316 1628404-1628716
IGLV5 IGLV5S1 IGLV5S1*01 F Thorbecke inbred NW_003159316 1558975-1559298
IGLV5S2 IGLV5S2*01 F Thorbecke inbred NW_003159316 1561860-1562184
IGLV5S3 IGLV5S3*01 F Thorbecke inbred NW_003159316 1577220-1577543
IGLV5S4 IGLV5S4*01 P (19) Thorbecke inbred NW_003159316 1592475-1592782
IGLV5S5 IGLV5S5*01 F Thorbecke inbred NW_003159316 1602309-1602633
IGLV5S6 IGLV5S6*01 F + Thorbecke inbred NW_003159316 1608386-1608709
IGLV5S7 IGLV5S7*01 P (20) Thorbecke inbred NW_003159316 1610901-1611225
IGLV5S8 IGLV5S8*01 P (21) Thorbecke inbred NW_003159316 1635840-1636147
IGLV5S9 IGLV5S9*01 F + Thorbecke inbred NW_003159316 1645189-1645512
IGLV5S10 IGLV5S10*01 F Thorbecke inbred NW_003159316 1682723-1683020
IGLV6 IGLV6S1 IGLV6S1*01 F Thorbecke inbred NW_003159316 1535005-1535303
IGLV6S2 IGLV6S2*01 P (22) Thorbecke inbred NW_003159316 1544166-1544462
IGLV6S3 IGLV6S3*01 F Thorbecke inbred NW_003159316 1569116-1569414
IGLV6S4 IGLV6S4*01 P (23) Thorbecke inbred NW_003159316 1573770-1574068
IGLV6S5 IGLV6S5*01 F Thorbecke inbred NW_003159316 1617785-1618083
IGLV6S6 IGLV6S6*01 F Thorbecke inbred NW_003159316 1625121-1625419
IGLV6S7 IGLV6S7*01 F Thorbecke inbred NW_003159316 1632734-1633032
IGLV7 IGLV7S1 IGLV7S1*01 P (24) Thorbecke inbred NW_003159316 1540184-1540445
IMGT notes:
  1. (1) Pseudogene because of a frameshift in FR1-IMGT
  2. (2) ORF because the end of the V-REGION is not determined due to a repeat of N nucleotides in the sequence
  3. (3) ORF because of non canonical DONOR-SPLICE sequence
  4. (4) Pseudogene because of STOP-CODON and a frameshift in FR1-IMGT and a frameshift in L-PART1
  5. (5) Pseudogene because of STOP-CODON in FR1-IMGT
  6. (6) Pseudogene because of several frameshifts in V-EXON
  7. (7) Pseudogene because of frameshifts in L-PART1 and L-PART2, STOP-CODON in CDR3-IMGT
  8. (8) Pseudogene because of STOP-CODON in FR3-IMGT
  9. (9) Pseudogene because of frameshifts and STOP-CODON in V-REGION
  10. (10) Pseudogene because of no INIT-CODON and a frameshift in V-REGION
  11. (11) Functional because of the STOP-CODON in CDR3-IMGT may disappears during the rearrangement. This allele has been find in a productive rearrangement.
  12. (12) Pseudogene because of there is a long insertion in the V-REGION (356 bp)
  13. (13) Pseudogene because of truncated gene in 3' end due to a gap in sequencing
  14. (14) Pseudogene because of DELETION of 1 nt in FR3-IMGT
  15. (15) Pseudogene because of several STOP-CODONs in V-EXON
  16. (16) Pseudogene because of several STOP-CODON in V-REGION
  17. (17) Pseudogene because of several STOP-CODON in V-REGION
  18. (18) Pseudogene because of STOP-CODON in CDR3-IMGT
  19. (19) Pseudogene because of several DELETION in V-REGION leading to frameshifts
  20. (20) Pseudogene because of STOP-CODON in V-REGION and frameshifts in L-PART1
  21. (21) Pseudogene because of frameshifts in V-REGION
  22. (22) Pseudogene because of a frameshift in FR3-IMGT
  23. (23) Pseudogene because of non canonical INIT-CODON sequence
  24. (24) Pseudogene because of no L-PART1 and several frameshifts in V-REGION
Created:
24/09/2012
Last updated:
22/09/2023
Authors:
Fatena Bellahcene